#529993 success

Owner
~tfardet
Created
5 months ago
Updated
5 months ago
Build manifest
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Tasks

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_apply_patch view log »
check view log »
setup view log »
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setup
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[#529993] 2021/06/21 07:03:25 Booting image ubuntu/lts (default) on port 22750
[#529993] 2021/06/21 07:03:27 Waiting for guest to settle
[#529993] 2021/06/21 07:03:34 Sending tasks
[#529993] 2021/06/21 07:03:35 Sending build environment
[#529993] 2021/06/21 07:03:35 Cloning repositories
Cloning into 'NNGT'...
+ cd NNGT
+ git submodule update --init
Submodule 'nngt/geometry' (https://github.com/SENeC-Initiative/PyNCulture.git) registered for path 'nngt/geometry'
Submodule 'nngt/plot/chord_diag' (https://codeberg.org/tfardet/mpl_chord_diagram.git) registered for path 'nngt/plot/chord_diag'
Cloning into '/home/build/NNGT/nngt/geometry'...
Cloning into '/home/build/NNGT/nngt/plot/chord_diag'...
Submodule path 'nngt/geometry': checked out '4c0bedd21a4af0c1f80aae58a7ef16b1ebd7d54f'
Submodule path 'nngt/plot/chord_diag': checked out 'f25f27e3b361d9665dbebf514c846105974d61d9'
[#529993] 2021/06/21 07:04:38 Running task _apply_patch
[#529993] 2021/06/21 07:04:39 Running task check
[#529993] 2021/06/21 07:04:39 Running task setup
[#529993] 2021/06/21 07:08:20 Running task test
[#529993] 2021/06/21 07:30:40 Processing post-success triggers for job group...
[#529993] 2021/06/21 07:30:40 Sent build results email to tfardet <tanguyfardet@protonmail.com>
[#529993] 2021/06/21 07:30:40 Processing post-success triggers...
[#529993] 2021/06/21 07:30:40 Sending webhook...
[#529993] 2021/06/21 07:30:40 Webhook response: 200
[#529993] 2021/06/21 07:30:40 Thanks!
_apply_patch
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+ echo Applying patch from lists.sr.ht
Applying patch from lists.sr.ht
+ git config --global user.name builds.sr.ht
+ git config --global user.email builds@sr.ht
+ cd NNGT
+ curl -sS https://lists.sr.ht/~tfardet/nngt-developers/patches/23414/mbox
+ git am -3 /tmp/23414.patch
Applying: Core - Check Graph **kwargs, automatic class
check
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+ cd NNGT
+ python3 extra/check_headers.py
setup


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Get:33 http://archive.ubuntu.com/ubuntu focal/main amd64 libwayland-client0 amd64 1.18.0-1 [23.9 kB]

22% [33 libwayland-client0 20.5 kB/23.9 kB 86%] [5 python3-graph-tool 549 kB/44
                                                                               
22% [5 python3-graph-tool 549 kB/44.2 MB 1%]
                                            
Get:34 http://archive.ubuntu.com/ubuntu focal/main amd64 libwayland-cursor0 amd64 1.18.0-1 [10.3 kB]

22% [34 libwayland-cursor0 10.3 kB/10.3 kB 100%] [5 python3-graph-tool 549 kB/4
                                                                               
23% [Waiting for headers] [5 python3-graph-tool 549 kB/44.2 MB 1%]
                                                                  
Get:35 http://archive.ubuntu.com/ubuntu focal/main amd64 libwayland-egl1 amd64 1.18.0-1 [5692 B]

23% [35 libwayland-egl1 5692 B/5692 B 100%] [5 python3-graph-tool 549 kB/44.2 M
                                                                               
Get:36 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcomposite1 amd64 1:0.4.5-1 [6976 B]

23% [36 libxcomposite1 6976 B/6976 B 100%] [5 python3-graph-tool 549 kB/44.2 MB
                                                                               
23% [5 python3-graph-tool 549 kB/44.2 MB 1%]
                                            
Get:37 http://archive.ubuntu.com/ubuntu focal/main amd64 libxfixes3 amd64 1:5.0.3-2 [10.9 kB]

23% [37 libxfixes3 10.9 kB/10.9 kB 100%] [5 python3-graph-tool 549 kB/44.2 MB 1
                                                                               
24% [Waiting for headers] [5 python3-graph-tool 549 kB/44.2 MB 1%]
                                                                  
Get:38 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcursor1 amd64 1:1.2.0-2 [20.1 kB]

24% [38 libxcursor1 9855 B/20.1 kB 49%] [5 python3-graph-tool 565 kB/44.2 MB 1%
                                                                               
24% [Waiting for headers] [5 python3-graph-tool 565 kB/44.2 MB 1%]
                                                                  
Get:39 http://archive.ubuntu.com/ubuntu focal/main amd64 libxdamage1 amd64 1:1.1.5-2 [6996 B]

24% [39 libxdamage1 6996 B/6996 B 100%] [5 python3-graph-tool 565 kB/44.2 MB 1%
                                                                               
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Get:40 http://archive.ubuntu.com/ubuntu focal/main amd64 libxi6 amd64 2:1.7.10-0ubuntu1 [29.9 kB]

24% [40 libxi6 5511 B/29.9 kB 18%] [5 python3-graph-tool 565 kB/44.2 MB 1%]
                                                                           
25% [Waiting for headers] [5 python3-graph-tool 565 kB/44.2 MB 1%]
                                                                  
Get:41 http://archive.ubuntu.com/ubuntu focal/main amd64 libxinerama1 amd64 2:1.1.4-2 [6904 B]

25% [41 libxinerama1 6904 B/6904 B 100%] [5 python3-graph-tool 565 kB/44.2 MB 1
                                                                               
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Get:42 http://archive.ubuntu.com/ubuntu focal/main amd64 libxkbcommon0 amd64 0.10.0-1 [98.4 kB]

25% [42 libxkbcommon0 6958 B/98.4 kB 7%] [5 python3-graph-tool 565 kB/44.2 MB 1
                                                                               
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Get:43 http://archive.ubuntu.com/ubuntu focal/main amd64 libxrandr2 amd64 2:1.5.2-0ubuntu1 [18.5 kB]

25% [43 libxrandr2 0 B/18.5 kB 0%] [5 python3-graph-tool 581 kB/44.2 MB 1%]
                                                                           
Get:44 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libgtk-3-common all 3.24.20-0ubuntu1 [235 kB]

26% [44 libgtk-3-common 6694 B/235 kB 3%] [5 python3-graph-tool 581 kB/44.2 MB 
                                                                               
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Get:45 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libgtk-3-0 amd64 3.24.20-0ubuntu1 [2620 kB]

26% [45 libgtk-3-0 0 B/2620 kB 0%] [5 python3-graph-tool 581 kB/44.2 MB 1%]
                                                                           
30% [5 python3-graph-tool 647 kB/44.2 MB 1%]
                                            
Get:46 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 gir1.2-gtk-3.0 amd64 3.24.20-0ubuntu1 [196 kB]

30% [46 gir1.2-gtk-3.0 0 B/196 kB 0%] [5 python3-graph-tool 647 kB/44.2 MB 1%]
                                                                              
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Get:47 http://archive.ubuntu.com/ubuntu focal/main amd64 libsuitesparseconfig5 amd64 1:5.7.1+dfsg-2 [9736 B]

31% [47 libsuitesparseconfig5 0 B/9736 B 0%] [5 python3-graph-tool 647 kB/44.2 
                                                                               
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Get:48 http://archive.ubuntu.com/ubuntu focal/main amd64 libamd2 amd64 1:5.7.1+dfsg-2 [20.0 kB]

31% [48 libamd2 0 B/20.0 kB 0%] [5 python3-graph-tool 647 kB/44.2 MB 1%]
                                                                        
32% [5 python3-graph-tool 647 kB/44.2 MB 1%]
                                            
Get:49 http://archive.ubuntu.com/ubuntu focal/universe amd64 libarpack2 amd64 3.7.0-3 [92.8 kB]

32% [49 libarpack2 0 B/92.8 kB 0%] [5 python3-graph-tool 647 kB/44.2 MB 1%]
                                                                           
32% [5 python3-graph-tool 647 kB/44.2 MB 1%]
                                            
Get:50 http://archive.ubuntu.com/ubuntu focal/main amd64 libsigc++-2.0-0v5 amd64 2.10.2-1build1 [11.7 kB]

32% [50 libsigc++-2.0-0v5 0 B/11.7 kB 0%] [5 python3-graph-tool 647 kB/44.2 MB 
                                                                               
32% [5 python3-graph-tool 647 kB/44.2 MB 1%]
                                            
Get:51 http://archive.ubuntu.com/ubuntu focal/main amd64 libcairomm-1.0-1v5 amd64 1.12.2-4build1 [39.4 kB]

32% [51 libcairomm-1.0-1v5 0 B/39.4 kB 0%] [5 python3-graph-tool 647 kB/44.2 MB
                                                                               
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Get:52 http://archive.ubuntu.com/ubuntu focal/main amd64 libcolamd2 amd64 1:5.7.1+dfsg-2 [17.0 kB]

33% [52 libcolamd2 0 B/17.0 kB 0%] [5 python3-graph-tool 647 kB/44.2 MB 1%]
                                                                           
33% [5 python3-graph-tool 647 kB/44.2 MB 1%]
                                            
Get:53 http://archive.ubuntu.com/ubuntu focal-security/main amd64 libgdk-pixbuf2.0-bin amd64 2.40.0+dfsg-3ubuntu0.2 [14.1 kB]

33% [53 libgdk-pixbuf2.0-bin 0 B/14.1 kB 0%] [5 python3-graph-tool 647 kB/44.2 
                                                                               
33% [5 python3-graph-tool 647 kB/44.2 MB 1%]
                                            
Get:54 http://archive.ubuntu.com/ubuntu focal/universe amd64 libglpk40 amd64 4.65-2 [378 kB]

33% [54 libglpk40 0 B/378 kB 0%] [5 python3-graph-tool 647 kB/44.2 MB 1%]
                                                                         
34% [5 python3-graph-tool 647 kB/44.2 MB 1%]
                                            
Get:55 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libgtk-3-bin amd64 3.24.20-0ubuntu1 [61.9 kB]

34% [55 libgtk-3-bin 0 B/61.9 kB 0%] [5 python3-graph-tool 663 kB/44.2 MB 2%]
                                                                             
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Get:56 http://archive.ubuntu.com/ubuntu focal/universe amd64 libigraph0v5 amd64 0.7.1-4build1 [806 kB]

35% [56 libigraph0v5 0 B/806 kB 0%] [5 python3-graph-tool 663 kB/44.2 MB 2%]
                                                                            
36% [5 python3-graph-tool 680 kB/44.2 MB 2%]
                                            
Get:57 http://archive.ubuntu.com/ubuntu focal/universe amd64 libigraph0-dev amd64 0.7.1-4build1 [54.7 kB]

36% [57 libigraph0-dev 0 B/54.7 kB 0%] [5 python3-graph-tool 680 kB/44.2 MB 2%]
                                                                               
36% [5 python3-graph-tool 680 kB/44.2 MB 2%]
                                            
Get:58 http://archive.ubuntu.com/ubuntu focal/universe amd64 python-cairo amd64 1.16.2-2ubuntu2 [57.1 kB]

36% [58 python-cairo 0 B/57.1 kB 0%] [5 python3-graph-tool 680 kB/44.2 MB 2%]
                                                                             
37% [5 python3-graph-tool 680 kB/44.2 MB 2%]
                                            
Get:59 http://archive.ubuntu.com/ubuntu focal/universe amd64 python-gi amd64 3.36.0-1 [212 kB]

37% [59 python-gi 0 B/212 kB 0%] [5 python3-graph-tool 680 kB/44.2 MB 2%]
                                                                         
37% [5 python3-graph-tool 680 kB/44.2 MB 2%]
                                            
Get:60 http://archive.ubuntu.com/ubuntu focal/universe amd64 python-gi-cairo amd64 3.36.0-1 [7668 B]

37% [60 python-gi-cairo 0 B/7668 B 0%] [5 python3-graph-tool 680 kB/44.2 MB 2%]
                                                                               
38% [5 python3-graph-tool 696 kB/44.2 MB 2%]
                                            
Get:61 http://archive.ubuntu.com/ubuntu focal-security/universe amd64 python-pip-whl all 20.0.2-5ubuntu1.5 [1805 kB]

38% [61 python-pip-whl 0 B/1805 kB 0%] [5 python3-graph-tool 696 kB/44.2 MB 2%]
                                                                               
41% [5 python3-graph-tool 696 kB/44.2 MB 2%]
                                            
Get:62 http://archive.ubuntu.com/ubuntu focal/universe amd64 python3-wheel all 0.34.2-1 [23.8 kB]

41% [62 python3-wheel 0 B/23.8 kB 0%] [5 python3-graph-tool 696 kB/44.2 MB 2%]
                                                                              
41% [5 python3-graph-tool 696 kB/44.2 MB 2%]
                                            
Get:63 http://archive.ubuntu.com/ubuntu focal-security/universe amd64 python3-pip all 20.0.2-5ubuntu1.5 [230 kB]

41% [63 python3-pip 0 B/230 kB 0%] [5 python3-graph-tool 696 kB/44.2 MB 2%]
                                                                           
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(Reading database ... 66753 files and directories currently installed.)
Preparing to unpack .../00-gir1.2-glib-2.0_1.64.1-1~ubuntu20.04.1_amd64.deb ...
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Unpacking hicolor-icon-theme (0.17-2) ...
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Unpacking libgdk-pixbuf2.0-0:amd64 (2.40.0+dfsg-3ubuntu0.2) ...
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No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed.
No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed.
Unpacking gtk-update-icon-cache (3.24.20-0ubuntu1) ...
Selecting previously unselected package librsvg2-2:amd64.
Preparing to unpack .../05-librsvg2-2_2.48.9-1ubuntu0.20.04.1_amd64.deb ...
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Selecting previously unselected package humanity-icon-theme.
Preparing to unpack .../07-humanity-icon-theme_0.6.15_all.deb ...
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Selecting previously unselected package libatspi2.0-0:amd64.
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Selecting previously unselected package gir1.2-freedesktop:amd64.
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Selecting previously unselected package gir1.2-gdkpixbuf-2.0:amd64.
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Selecting previously unselected package libatk-bridge2.0-0:amd64.
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Unpacking libatk-bridge2.0-0:amd64 (2.34.2-0ubuntu2~20.04.1) ...
Selecting previously unselected package libcolord2:amd64.
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Unpacking libcolord2:amd64 (1.4.4-2) ...
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Unpacking libavahi-common3:amd64 (0.7-4ubuntu7) ...
Selecting previously unselected package libavahi-client3:amd64.
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Unpacking libavahi-client3:amd64 (0.7-4ubuntu7) ...
Selecting previously unselected package libcups2:amd64.
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Unpacking libcups2:amd64 (2.3.1-9ubuntu1.1) ...
Selecting previously unselected package libepoxy0:amd64.
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Unpacking libepoxy0:amd64 (1.5.4-1) ...
Selecting previously unselected package libjson-glib-1.0-common.
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Unpacking libjson-glib-1.0-common (1.4.4-2ubuntu2) ...
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Unpacking libjson-glib-1.0-0:amd64 (1.4.4-2ubuntu2) ...
Selecting previously unselected package libsoup-gnome2.4-1:amd64.
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Unpacking libsoup-gnome2.4-1:amd64 (2.70.0-1) ...
Selecting previously unselected package librest-0.7-0:amd64.
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Unpacking librest-0.7-0:amd64 (0.8.1-1) ...
Selecting previously unselected package libwayland-client0:amd64.
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Unpacking libwayland-client0:amd64 (1.18.0-1) ...
Selecting previously unselected package libwayland-cursor0:amd64.
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Unpacking libwayland-cursor0:amd64 (1.18.0-1) ...
Selecting previously unselected package libwayland-egl1:amd64.
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Unpacking libwayland-egl1:amd64 (1.18.0-1) ...
Selecting previously unselected package libxcomposite1:amd64.
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+ pip3 install numpy scipy cython mpi4py
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Requirement already satisfied: scipy in /usr/lib/python3/dist-packages (1.3.3)
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Requirement already satisfied: mpi4py in /usr/lib/python3/dist-packages (3.0.3)
+ pip3 install networkx python-igraph
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+ pip3 install pytest pytest-mpi cov-core coverage
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[?25hRequirement already satisfied: more-itertools>=4.0.0 in /usr/lib/python3/dist-packages (from pytest) (4.2.0)
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Successfully installed cov-core-1.15.0 coverage-5.5 pytest-mpi-0.5
+ cd NNGT
+ python3 setup.py install --user
Compiling ./nngt/generation/cconnect.pyx because it changed.
[1/1] Cythonizing ./nngt/generation/cconnect.pyx
running install
running bdist_egg
running egg_info
creating nngt.egg-info
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writing dependency_links to nngt.egg-info/dependency_links.txt
writing requirements to nngt.egg-info/requires.txt
writing top-level names to nngt.egg-info/top_level.txt
writing manifest file 'nngt.egg-info/SOURCES.txt'
reading manifest file 'nngt.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'nngt/generation/cconnect.cpp'
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writing manifest file 'nngt.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/nngt
copying ./nngt/__init__.py -> build/lib.linux-x86_64-3.8/nngt
creating build/lib.linux-x86_64-3.8/testing
copying ./testing/test_random.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/test_nest.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/test_weights.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/test_mpi.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/tools_testing.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/test_generation2.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/base_test.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/test_analysis.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/test_plots.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/test_group_pop.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/test_generation.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/test_rewire.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/__init__.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/test_attributes.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/test_basics.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/test_graphclasses.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/library_compatibility.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/test_io.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/test_gallery.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/test_examples.py -> build/lib.linux-x86_64-3.8/testing
copying ./testing/test_connect_group_type.py -> build/lib.linux-x86_64-3.8/testing
creating build/lib.linux-x86_64-3.8/nngt/plot
copying ./nngt/plot/hive_helpers.py -> build/lib.linux-x86_64-3.8/nngt/plot
copying ./nngt/plot/custom_plt.py -> build/lib.linux-x86_64-3.8/nngt/plot
copying ./nngt/plot/plt_properties.py -> build/lib.linux-x86_64-3.8/nngt/plot
copying ./nngt/plot/__init__.py -> build/lib.linux-x86_64-3.8/nngt/plot
copying ./nngt/plot/animations.py -> build/lib.linux-x86_64-3.8/nngt/plot
copying ./nngt/plot/plt_networks.py -> build/lib.linux-x86_64-3.8/nngt/plot
creating build/lib.linux-x86_64-3.8/nngt/geospatial
copying ./nngt/geospatial/plot.py -> build/lib.linux-x86_64-3.8/nngt/geospatial
copying ./nngt/geospatial/countries.py -> build/lib.linux-x86_64-3.8/nngt/geospatial
copying ./nngt/geospatial/_cartopy_ne.py -> build/lib.linux-x86_64-3.8/nngt/geospatial
copying ./nngt/geospatial/__init__.py -> build/lib.linux-x86_64-3.8/nngt/geospatial
creating build/lib.linux-x86_64-3.8/nngt/generation
copying ./nngt/generation/connectors.py -> build/lib.linux-x86_64-3.8/nngt/generation
copying ./nngt/generation/connect_algorithms.py -> build/lib.linux-x86_64-3.8/nngt/generation
copying ./nngt/generation/rewiring.py -> build/lib.linux-x86_64-3.8/nngt/generation
copying ./nngt/generation/__init__.py -> build/lib.linux-x86_64-3.8/nngt/generation
copying ./nngt/generation/graph_connectivity.py -> build/lib.linux-x86_64-3.8/nngt/generation
copying ./nngt/generation/mpi_connect.py -> build/lib.linux-x86_64-3.8/nngt/generation
creating build/lib.linux-x86_64-3.8/nngt/io
copying ./nngt/io/saving_helpers.py -> build/lib.linux-x86_64-3.8/nngt/io
copying ./nngt/io/io_helpers.py -> build/lib.linux-x86_64-3.8/nngt/io
copying ./nngt/io/__init__.py -> build/lib.linux-x86_64-3.8/nngt/io
copying ./nngt/io/loading_helpers.py -> build/lib.linux-x86_64-3.8/nngt/io
copying ./nngt/io/graph_loading.py -> build/lib.linux-x86_64-3.8/nngt/io
copying ./nngt/io/graph_saving.py -> build/lib.linux-x86_64-3.8/nngt/io
creating build/lib.linux-x86_64-3.8/nngt/analysis
copying ./nngt/analysis/nx_functions.py -> build/lib.linux-x86_64-3.8/nngt/analysis
copying ./nngt/analysis/bayesian_blocks.py -> build/lib.linux-x86_64-3.8/nngt/analysis
copying ./nngt/analysis/nngt_functions.py -> build/lib.linux-x86_64-3.8/nngt/analysis
copying ./nngt/analysis/__init__.py -> build/lib.linux-x86_64-3.8/nngt/analysis
copying ./nngt/analysis/graph_analysis.py -> build/lib.linux-x86_64-3.8/nngt/analysis
copying ./nngt/analysis/activity_analysis.py -> build/lib.linux-x86_64-3.8/nngt/analysis
copying ./nngt/analysis/clustering.py -> build/lib.linux-x86_64-3.8/nngt/analysis
copying ./nngt/analysis/ig_functions.py -> build/lib.linux-x86_64-3.8/nngt/analysis
copying ./nngt/analysis/gt_functions.py -> build/lib.linux-x86_64-3.8/nngt/analysis
creating build/lib.linux-x86_64-3.8/nngt/simulation
copying ./nngt/simulation/nest_activity.py -> build/lib.linux-x86_64-3.8/nngt/simulation
copying ./nngt/simulation/__init__.py -> build/lib.linux-x86_64-3.8/nngt/simulation
copying ./nngt/simulation/nest_plot.py -> build/lib.linux-x86_64-3.8/nngt/simulation
copying ./nngt/simulation/nest_graph.py -> build/lib.linux-x86_64-3.8/nngt/simulation
copying ./nngt/simulation/nest_utils.py -> build/lib.linux-x86_64-3.8/nngt/simulation
creating build/lib.linux-x86_64-3.8/nngt/database
copying ./nngt/database/db_main.py -> build/lib.linux-x86_64-3.8/nngt/database
copying ./nngt/database/__init__.py -> build/lib.linux-x86_64-3.8/nngt/database
copying ./nngt/database/pickle_field.py -> build/lib.linux-x86_64-3.8/nngt/database
copying ./nngt/database/csv_utils.py -> build/lib.linux-x86_64-3.8/nngt/database
copying ./nngt/database/db_generation.py -> build/lib.linux-x86_64-3.8/nngt/database
creating build/lib.linux-x86_64-3.8/nngt/lib
copying ./nngt/lib/converters.py -> build/lib.linux-x86_64-3.8/nngt/lib
copying ./nngt/lib/graph_backends.py -> build/lib.linux-x86_64-3.8/nngt/lib
copying ./nngt/lib/errors.py -> build/lib.linux-x86_64-3.8/nngt/lib
copying ./nngt/lib/graph_helpers.py -> build/lib.linux-x86_64-3.8/nngt/lib
copying ./nngt/lib/db_tools.py -> build/lib.linux-x86_64-3.8/nngt/lib
copying ./nngt/lib/constants.py -> build/lib.linux-x86_64-3.8/nngt/lib
copying ./nngt/lib/decorator.py -> build/lib.linux-x86_64-3.8/nngt/lib
copying ./nngt/lib/nngt_config.py -> build/lib.linux-x86_64-3.8/nngt/lib
copying ./nngt/lib/__init__.py -> build/lib.linux-x86_64-3.8/nngt/lib
copying ./nngt/lib/rng_tools.py -> build/lib.linux-x86_64-3.8/nngt/lib
copying ./nngt/lib/sorting.py -> build/lib.linux-x86_64-3.8/nngt/lib
copying ./nngt/lib/logger.py -> build/lib.linux-x86_64-3.8/nngt/lib
copying ./nngt/lib/test_functions.py -> build/lib.linux-x86_64-3.8/nngt/lib
copying ./nngt/lib/connect_tools.py -> build/lib.linux-x86_64-3.8/nngt/lib
copying ./nngt/lib/_frozendict.py -> build/lib.linux-x86_64-3.8/nngt/lib
creating build/lib.linux-x86_64-3.8/nngt/core
copying ./nngt/core/networks.py -> build/lib.linux-x86_64-3.8/nngt/core
copying ./nngt/core/ig_graph.py -> build/lib.linux-x86_64-3.8/nngt/core
copying ./nngt/core/neural_pop_group.py -> build/lib.linux-x86_64-3.8/nngt/core
copying ./nngt/core/nngt_graph.py -> build/lib.linux-x86_64-3.8/nngt/core
copying ./nngt/core/nx_graph.py -> build/lib.linux-x86_64-3.8/nngt/core
copying ./nngt/core/__init__.py -> build/lib.linux-x86_64-3.8/nngt/core
copying ./nngt/core/spatial_graph.py -> build/lib.linux-x86_64-3.8/nngt/core
copying ./nngt/core/graph_interface.py -> build/lib.linux-x86_64-3.8/nngt/core
copying ./nngt/core/group_structure.py -> build/lib.linux-x86_64-3.8/nngt/core
copying ./nngt/core/graph.py -> build/lib.linux-x86_64-3.8/nngt/core
copying ./nngt/core/connections.py -> build/lib.linux-x86_64-3.8/nngt/core
copying ./nngt/core/gt_graph.py -> build/lib.linux-x86_64-3.8/nngt/core
creating build/lib.linux-x86_64-3.8/nngt/geometry
copying ./nngt/geometry/units.py -> build/lib.linux-x86_64-3.8/nngt/geometry
copying ./nngt/geometry/plot.py -> build/lib.linux-x86_64-3.8/nngt/geometry
copying ./nngt/geometry/geom_utils.py -> build/lib.linux-x86_64-3.8/nngt/geometry
copying ./nngt/geometry/svgtools.py -> build/lib.linux-x86_64-3.8/nngt/geometry
copying ./nngt/geometry/__init__.py -> build/lib.linux-x86_64-3.8/nngt/geometry
copying ./nngt/geometry/dxftools.py -> build/lib.linux-x86_64-3.8/nngt/geometry
copying ./nngt/geometry/backup_shape.py -> build/lib.linux-x86_64-3.8/nngt/geometry
copying ./nngt/geometry/pync_log.py -> build/lib.linux-x86_64-3.8/nngt/geometry
copying ./nngt/geometry/shape_io.py -> build/lib.linux-x86_64-3.8/nngt/geometry
copying ./nngt/geometry/triangulate.py -> build/lib.linux-x86_64-3.8/nngt/geometry
copying ./nngt/geometry/shape.py -> build/lib.linux-x86_64-3.8/nngt/geometry
copying ./nngt/geometry/setup.py -> build/lib.linux-x86_64-3.8/nngt/geometry
copying ./nngt/geometry/tools.py -> build/lib.linux-x86_64-3.8/nngt/geometry
creating build/lib.linux-x86_64-3.8/nngt/plot/chord_diag
copying ./nngt/plot/chord_diag/_info.py -> build/lib.linux-x86_64-3.8/nngt/plot/chord_diag
copying ./nngt/plot/chord_diag/__init__.py -> build/lib.linux-x86_64-3.8/nngt/plot/chord_diag
copying ./nngt/plot/chord_diag/utilities.py -> build/lib.linux-x86_64-3.8/nngt/plot/chord_diag
copying ./nngt/plot/chord_diag/gradient.py -> build/lib.linux-x86_64-3.8/nngt/plot/chord_diag
copying ./nngt/plot/chord_diag/setup.py -> build/lib.linux-x86_64-3.8/nngt/plot/chord_diag
copying ./nngt/plot/chord_diag/chord_diagram.py -> build/lib.linux-x86_64-3.8/nngt/plot/chord_diag
copying ./nngt/plot/chord_diag/example.py -> build/lib.linux-x86_64-3.8/nngt/plot/chord_diag
creating build/lib.linux-x86_64-3.8/nngt/geometry/dxf_import
copying ./nngt/geometry/dxf_import/homcoord.py -> build/lib.linux-x86_64-3.8/nngt/geometry/dxf_import
copying ./nngt/geometry/dxf_import/__init__.py -> build/lib.linux-x86_64-3.8/nngt/geometry/dxf_import
copying ./nngt/geometry/dxf_import/read_dxf.py -> build/lib.linux-x86_64-3.8/nngt/geometry/dxf_import
copying ./nngt/nngt.conf.default -> build/lib.linux-x86_64-3.8/nngt
copying ./nngt/generation/cconnect.cpp -> build/lib.linux-x86_64-3.8/nngt/generation
copying ./nngt/generation/cconnect.pxd -> build/lib.linux-x86_64-3.8/nngt/generation
copying ./nngt/generation/cconnect.pyx -> build/lib.linux-x86_64-3.8/nngt/generation
copying ./nngt/generation/cconnect.pyxbld -> build/lib.linux-x86_64-3.8/nngt/generation
copying ./nngt/generation/func_connect.cpp -> build/lib.linux-x86_64-3.8/nngt/generation
copying ./nngt/generation/func_connect.h -> build/lib.linux-x86_64-3.8/nngt/generation
copying ./nngt/geometry/requirements.txt -> build/lib.linux-x86_64-3.8/nngt/geometry
copying ./nngt/geometry/README.md -> build/lib.linux-x86_64-3.8/nngt/geometry
copying ./nngt/plot/chord_diag/requirements.txt -> build/lib.linux-x86_64-3.8/nngt/plot/chord_diag
copying ./nngt/plot/chord_diag/README.md -> build/lib.linux-x86_64-3.8/nngt/plot/chord_diag
running build_ext
building 'nngt.generation.cconnect' extension
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/nngt
creating build/temp.linux-x86_64-3.8/nngt/generation
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./nngt/generation -I./nngt/generation/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c ./nngt/generation/cconnect.cpp -o build/temp.linux-x86_64-3.8/./nngt/generation/cconnect.o -std=c++11 -Wno-cpp -Wno-unused-function -fopenmp -ffast-math -msse -ftree-vectorize -O2 -g
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./nngt/generation -I./nngt/generation/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c ./nngt/generation/func_connect.cpp -o build/temp.linux-x86_64-3.8/./nngt/generation/func_connect.o -std=c++11 -Wno-cpp -Wno-unused-function -fopenmp -ffast-math -msse -ftree-vectorize -O2 -g
x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8/./nngt/generation/cconnect.o build/temp.linux-x86_64-3.8/./nngt/generation/func_connect.o -L./nngt/generation/ -lgomp -o build/lib.linux-x86_64-3.8/nngt/generation/cconnect.cpython-38-x86_64-linux-gnu.so -fopenmp
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/nngt
creating build/bdist.linux-x86_64/egg/nngt/plot
copying build/lib.linux-x86_64-3.8/nngt/plot/hive_helpers.py -> build/bdist.linux-x86_64/egg/nngt/plot
copying build/lib.linux-x86_64-3.8/nngt/plot/custom_plt.py -> build/bdist.linux-x86_64/egg/nngt/plot
copying build/lib.linux-x86_64-3.8/nngt/plot/plt_properties.py -> build/bdist.linux-x86_64/egg/nngt/plot
copying build/lib.linux-x86_64-3.8/nngt/plot/__init__.py -> build/bdist.linux-x86_64/egg/nngt/plot
creating build/bdist.linux-x86_64/egg/nngt/plot/chord_diag
copying build/lib.linux-x86_64-3.8/nngt/plot/chord_diag/requirements.txt -> build/bdist.linux-x86_64/egg/nngt/plot/chord_diag
copying build/lib.linux-x86_64-3.8/nngt/plot/chord_diag/README.md -> build/bdist.linux-x86_64/egg/nngt/plot/chord_diag
copying build/lib.linux-x86_64-3.8/nngt/plot/chord_diag/_info.py -> build/bdist.linux-x86_64/egg/nngt/plot/chord_diag
copying build/lib.linux-x86_64-3.8/nngt/plot/chord_diag/__init__.py -> build/bdist.linux-x86_64/egg/nngt/plot/chord_diag
copying build/lib.linux-x86_64-3.8/nngt/plot/chord_diag/utilities.py -> build/bdist.linux-x86_64/egg/nngt/plot/chord_diag
copying build/lib.linux-x86_64-3.8/nngt/plot/chord_diag/gradient.py -> build/bdist.linux-x86_64/egg/nngt/plot/chord_diag
copying build/lib.linux-x86_64-3.8/nngt/plot/chord_diag/setup.py -> build/bdist.linux-x86_64/egg/nngt/plot/chord_diag
copying build/lib.linux-x86_64-3.8/nngt/plot/chord_diag/chord_diagram.py -> build/bdist.linux-x86_64/egg/nngt/plot/chord_diag
copying build/lib.linux-x86_64-3.8/nngt/plot/chord_diag/example.py -> build/bdist.linux-x86_64/egg/nngt/plot/chord_diag
copying build/lib.linux-x86_64-3.8/nngt/plot/animations.py -> build/bdist.linux-x86_64/egg/nngt/plot
copying build/lib.linux-x86_64-3.8/nngt/plot/plt_networks.py -> build/bdist.linux-x86_64/egg/nngt/plot
creating build/bdist.linux-x86_64/egg/nngt/geospatial
copying build/lib.linux-x86_64-3.8/nngt/geospatial/plot.py -> build/bdist.linux-x86_64/egg/nngt/geospatial
copying build/lib.linux-x86_64-3.8/nngt/geospatial/countries.py -> build/bdist.linux-x86_64/egg/nngt/geospatial
copying build/lib.linux-x86_64-3.8/nngt/geospatial/_cartopy_ne.py -> build/bdist.linux-x86_64/egg/nngt/geospatial
copying build/lib.linux-x86_64-3.8/nngt/geospatial/__init__.py -> build/bdist.linux-x86_64/egg/nngt/geospatial
creating build/bdist.linux-x86_64/egg/nngt/generation
copying build/lib.linux-x86_64-3.8/nngt/generation/cconnect.cpp -> build/bdist.linux-x86_64/egg/nngt/generation
copying build/lib.linux-x86_64-3.8/nngt/generation/connectors.py -> build/bdist.linux-x86_64/egg/nngt/generation
copying build/lib.linux-x86_64-3.8/nngt/generation/connect_algorithms.py -> build/bdist.linux-x86_64/egg/nngt/generation
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copying build/lib.linux-x86_64-3.8/nngt/generation/__init__.py -> build/bdist.linux-x86_64/egg/nngt/generation
copying build/lib.linux-x86_64-3.8/nngt/generation/cconnect.pyx -> build/bdist.linux-x86_64/egg/nngt/generation
copying build/lib.linux-x86_64-3.8/nngt/generation/graph_connectivity.py -> build/bdist.linux-x86_64/egg/nngt/generation
copying build/lib.linux-x86_64-3.8/nngt/generation/cconnect.pyxbld -> build/bdist.linux-x86_64/egg/nngt/generation
copying build/lib.linux-x86_64-3.8/nngt/generation/func_connect.h -> build/bdist.linux-x86_64/egg/nngt/generation
copying build/lib.linux-x86_64-3.8/nngt/generation/func_connect.cpp -> build/bdist.linux-x86_64/egg/nngt/generation
copying build/lib.linux-x86_64-3.8/nngt/generation/mpi_connect.py -> build/bdist.linux-x86_64/egg/nngt/generation
copying build/lib.linux-x86_64-3.8/nngt/generation/cconnect.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/egg/nngt/generation
copying build/lib.linux-x86_64-3.8/nngt/generation/cconnect.pxd -> build/bdist.linux-x86_64/egg/nngt/generation
copying build/lib.linux-x86_64-3.8/nngt/nngt.conf.default -> build/bdist.linux-x86_64/egg/nngt
creating build/bdist.linux-x86_64/egg/nngt/io
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copying build/lib.linux-x86_64-3.8/nngt/io/io_helpers.py -> build/bdist.linux-x86_64/egg/nngt/io
copying build/lib.linux-x86_64-3.8/nngt/io/__init__.py -> build/bdist.linux-x86_64/egg/nngt/io
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copying build/lib.linux-x86_64-3.8/nngt/io/graph_saving.py -> build/bdist.linux-x86_64/egg/nngt/io
creating build/bdist.linux-x86_64/egg/nngt/analysis
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copying build/lib.linux-x86_64-3.8/nngt/analysis/bayesian_blocks.py -> build/bdist.linux-x86_64/egg/nngt/analysis
copying build/lib.linux-x86_64-3.8/nngt/analysis/nngt_functions.py -> build/bdist.linux-x86_64/egg/nngt/analysis
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copying build/lib.linux-x86_64-3.8/nngt/analysis/graph_analysis.py -> build/bdist.linux-x86_64/egg/nngt/analysis
copying build/lib.linux-x86_64-3.8/nngt/analysis/activity_analysis.py -> build/bdist.linux-x86_64/egg/nngt/analysis
copying build/lib.linux-x86_64-3.8/nngt/analysis/clustering.py -> build/bdist.linux-x86_64/egg/nngt/analysis
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copying build/lib.linux-x86_64-3.8/nngt/analysis/gt_functions.py -> build/bdist.linux-x86_64/egg/nngt/analysis
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creating build/bdist.linux-x86_64/egg/nngt/simulation
copying build/lib.linux-x86_64-3.8/nngt/simulation/nest_activity.py -> build/bdist.linux-x86_64/egg/nngt/simulation
copying build/lib.linux-x86_64-3.8/nngt/simulation/__init__.py -> build/bdist.linux-x86_64/egg/nngt/simulation
copying build/lib.linux-x86_64-3.8/nngt/simulation/nest_plot.py -> build/bdist.linux-x86_64/egg/nngt/simulation
copying build/lib.linux-x86_64-3.8/nngt/simulation/nest_graph.py -> build/bdist.linux-x86_64/egg/nngt/simulation
copying build/lib.linux-x86_64-3.8/nngt/simulation/nest_utils.py -> build/bdist.linux-x86_64/egg/nngt/simulation
creating build/bdist.linux-x86_64/egg/nngt/database
copying build/lib.linux-x86_64-3.8/nngt/database/db_main.py -> build/bdist.linux-x86_64/egg/nngt/database
copying build/lib.linux-x86_64-3.8/nngt/database/__init__.py -> build/bdist.linux-x86_64/egg/nngt/database
copying build/lib.linux-x86_64-3.8/nngt/database/pickle_field.py -> build/bdist.linux-x86_64/egg/nngt/database
copying build/lib.linux-x86_64-3.8/nngt/database/csv_utils.py -> build/bdist.linux-x86_64/egg/nngt/database
copying build/lib.linux-x86_64-3.8/nngt/database/db_generation.py -> build/bdist.linux-x86_64/egg/nngt/database
creating build/bdist.linux-x86_64/egg/nngt/lib
copying build/lib.linux-x86_64-3.8/nngt/lib/converters.py -> build/bdist.linux-x86_64/egg/nngt/lib
copying build/lib.linux-x86_64-3.8/nngt/lib/graph_backends.py -> build/bdist.linux-x86_64/egg/nngt/lib
copying build/lib.linux-x86_64-3.8/nngt/lib/errors.py -> build/bdist.linux-x86_64/egg/nngt/lib
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copying build/lib.linux-x86_64-3.8/nngt/lib/constants.py -> build/bdist.linux-x86_64/egg/nngt/lib
copying build/lib.linux-x86_64-3.8/nngt/lib/decorator.py -> build/bdist.linux-x86_64/egg/nngt/lib
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copying build/lib.linux-x86_64-3.8/nngt/core/nx_graph.py -> build/bdist.linux-x86_64/egg/nngt/core
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copying build/lib.linux-x86_64-3.8/nngt/geometry/shape.py -> build/bdist.linux-x86_64/egg/nngt/geometry
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byte-compiling build/bdist.linux-x86_64/egg/nngt/plot/hive_helpers.py to hive_helpers.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/plot/custom_plt.py to custom_plt.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/plot/plt_properties.py to plt_properties.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/plot/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/plot/chord_diag/_info.py to _info.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/plot/chord_diag/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/plot/chord_diag/utilities.py to utilities.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/plot/chord_diag/gradient.py to gradient.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/plot/chord_diag/setup.py to setup.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/plot/chord_diag/chord_diagram.py to chord_diagram.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/plot/chord_diag/example.py to example.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/plot/animations.py to animations.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/plot/plt_networks.py to plt_networks.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geospatial/plot.py to plot.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geospatial/countries.py to countries.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geospatial/_cartopy_ne.py to _cartopy_ne.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geospatial/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/generation/connectors.py to connectors.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/generation/connect_algorithms.py to connect_algorithms.cpython-38.pyc
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byte-compiling build/bdist.linux-x86_64/egg/nngt/io/io_helpers.py to io_helpers.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/io/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/io/loading_helpers.py to loading_helpers.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/io/graph_loading.py to graph_loading.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/io/graph_saving.py to graph_saving.cpython-38.pyc
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byte-compiling build/bdist.linux-x86_64/egg/nngt/analysis/bayesian_blocks.py to bayesian_blocks.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/analysis/nngt_functions.py to nngt_functions.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/analysis/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/analysis/graph_analysis.py to graph_analysis.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/analysis/activity_analysis.py to activity_analysis.cpython-38.pyc
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byte-compiling build/bdist.linux-x86_64/egg/nngt/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/simulation/nest_activity.py to nest_activity.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/simulation/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/simulation/nest_plot.py to nest_plot.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/simulation/nest_graph.py to nest_graph.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/simulation/nest_utils.py to nest_utils.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/database/db_main.py to db_main.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/database/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/database/pickle_field.py to pickle_field.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/database/csv_utils.py to csv_utils.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/database/db_generation.py to db_generation.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/lib/converters.py to converters.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/lib/graph_backends.py to graph_backends.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/lib/errors.py to errors.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/lib/graph_helpers.py to graph_helpers.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/lib/db_tools.py to db_tools.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/lib/constants.py to constants.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/lib/decorator.py to decorator.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/lib/nngt_config.py to nngt_config.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/lib/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/lib/rng_tools.py to rng_tools.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/lib/sorting.py to sorting.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/lib/logger.py to logger.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/lib/test_functions.py to test_functions.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/lib/connect_tools.py to connect_tools.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/lib/_frozendict.py to _frozendict.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/core/networks.py to networks.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/core/ig_graph.py to ig_graph.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/core/neural_pop_group.py to neural_pop_group.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/core/nngt_graph.py to nngt_graph.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/core/nx_graph.py to nx_graph.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/core/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/core/spatial_graph.py to spatial_graph.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/core/graph_interface.py to graph_interface.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/core/group_structure.py to group_structure.cpython-38.pyc
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byte-compiling build/bdist.linux-x86_64/egg/nngt/core/connections.py to connections.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/core/gt_graph.py to gt_graph.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geometry/units.py to units.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geometry/plot.py to plot.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geometry/geom_utils.py to geom_utils.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geometry/svgtools.py to svgtools.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geometry/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geometry/dxftools.py to dxftools.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geometry/backup_shape.py to backup_shape.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geometry/pync_log.py to pync_log.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geometry/shape_io.py to shape_io.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geometry/triangulate.py to triangulate.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geometry/shape.py to shape.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geometry/setup.py to setup.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geometry/tools.py to tools.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geometry/dxf_import/homcoord.py to homcoord.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geometry/dxf_import/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/nngt/geometry/dxf_import/read_dxf.py to read_dxf.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_random.py to test_random.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_nest.py to test_nest.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_weights.py to test_weights.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_mpi.py to test_mpi.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/tools_testing.py to tools_testing.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_generation2.py to test_generation2.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/base_test.py to base_test.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_analysis.py to test_analysis.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_plots.py to test_plots.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_group_pop.py to test_group_pop.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_generation.py to test_generation.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_rewire.py to test_rewire.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_attributes.py to test_attributes.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_basics.py to test_basics.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_graphclasses.py to test_graphclasses.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/library_compatibility.py to library_compatibility.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_io.py to test_io.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_gallery.py to test_gallery.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_examples.py to test_examples.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/testing/test_connect_group_type.py to test_connect_group_type.cpython-38.pyc
creating stub loader for nngt/generation/cconnect.cpython-38-x86_64-linux-gnu.so
byte-compiling build/bdist.linux-x86_64/egg/nngt/generation/cconnect.py to cconnect.cpython-38.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying nngt.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying nngt.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying nngt.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying nngt.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying nngt.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
writing build/bdist.linux-x86_64/egg/EGG-INFO/native_libs.txt
zip_safe flag not set; analyzing archive contents...
nngt.__pycache__.__init__.cpython-38: module references __file__
nngt.generation.__pycache__.cconnect.cpython-38: module references __file__
nngt.lib.__pycache__.logger.cpython-38: module MAY be using inspect.stack
nngt.plot.chord_diag.__pycache__.setup.cpython-38: module references __file__
testing.__pycache__.__init__.cpython-38: module references __file__
testing.__pycache__.base_test.cpython-38: module references __file__
testing.__pycache__.test_attributes.cpython-38: module references __file__
testing.__pycache__.test_examples.cpython-38: module references __file__
testing.__pycache__.test_gallery.cpython-38: module references __file__
testing.__pycache__.test_io.cpython-38: module references __file__
testing.__pycache__.test_plots.cpython-38: module references __file__
creating dist
creating 'dist/nngt-2.3.0-py3.8-linux-x86_64.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing nngt-2.3.0-py3.8-linux-x86_64.egg
creating /home/build/.local/lib/python3.8/site-packages/nngt-2.3.0-py3.8-linux-x86_64.egg
Extracting nngt-2.3.0-py3.8-linux-x86_64.egg to /home/build/.local/lib/python3.8/site-packages
Adding nngt 2.3.0 to easy-install.pth file

Installed /home/build/.local/lib/python3.8/site-packages/nngt-2.3.0-py3.8-linux-x86_64.egg
Processing dependencies for nngt==2.3.0
Searching for scipy==1.3.3
Best match: scipy 1.3.3
Adding scipy 1.3.3 to easy-install.pth file

Using /usr/lib/python3/dist-packages
Searching for numpy==1.17.4
Best match: numpy 1.17.4
Adding numpy 1.17.4 to easy-install.pth file
Installing f2py script to /home/build/.local/bin
Installing f2py3 script to /home/build/.local/bin
Installing f2py3.8 script to /home/build/.local/bin

Using /usr/lib/python3/dist-packages
Finished processing dependencies for nngt==2.3.0
+ echo 'export PATH=$PATH:/home/build/.local/bin'
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+ cd NNGT
+ GL=all
+ coverage run -p -m pytest testing/library_compatibility.py
============================= test session starts ==============================
platform linux -- Python 3.8.5, pytest-4.6.9, py-1.8.1, pluggy-0.13.0
rootdir: /home/build/NNGT
plugins: mpi-0.5
collecting ... 
collecting 11 items                                                            
collected 11 items                                                             

testing/library_compatibility.py ...........                             [100%]

=============================== warnings summary ===============================
testing/library_compatibility.py::test_weighted_undirected_clustering
testing/library_compatibility.py::test_weighted_undirected_clustering
testing/library_compatibility.py::test_weighted_undirected_clustering
testing/library_compatibility.py::test_weighted_undirected_clustering
testing/library_compatibility.py::test_weighted_undirected_clustering
testing/library_compatibility.py::test_weighted_undirected_clustering
testing/library_compatibility.py::test_weighted_undirected_clustering
testing/library_compatibility.py::test_weighted_undirected_clustering
testing/library_compatibility.py::test_weighted_undirected_clustering
testing/library_compatibility.py::test_weighted_undirected_clustering
  /usr/lib/python3/dist-packages/scipy/sparse/_index.py:126: SparseEfficiencyWarning:Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.

testing/library_compatibility.py::test_binary_shortest_distance
  /usr/lib/python3/dist-packages/graph_tool/topology/__init__.py:1950: DeprecationWarning:Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working

testing/library_compatibility.py::test_binary_shortest_paths
  /home/build/NNGT/nngt/analysis/ig_functions.py:373: RuntimeWarning:Couldn't reach some vertices at src/paths/unweighted.c:367

testing/library_compatibility.py::test_weighted_shortest_paths
  /home/build/NNGT/nngt/analysis/ig_functions.py:373: RuntimeWarning:Couldn't reach some vertices at src/paths/dijkstra.c:441

-- Docs: https://docs.pytest.org/en/latest/warnings.html
==================== 11 passed, 13 warnings in 4.93 seconds ====================
+ GL=gt
+ coverage run -p -m pytest testing
============================= test session starts ==============================
platform linux -- Python 3.8.5, pytest-4.6.9, py-1.8.1, pluggy-0.13.0
rootdir: /home/build/NNGT
plugins: mpi-0.5
collecting ... 
collecting 0 items                                                             
collected 82 items                                                             

testing/test_analysis.py ..........                                      [ 12%]
testing/test_attributes.py ...........                                   [ 25%]
testing/test_basics.py ............                                      [ 40%]
testing/test_connect_group_type.py ...                                   [ 43%]
testing/test_examples.py s                                               [ 45%]
testing/test_gallery.py ..                                               [ 47%]
testing/test_generation.py .                                             [ 48%]
testing/test_generation2.py ...s......                                   [ 60%]
testing/test_graphclasses.py ....                                        [ 65%]
testing/test_group_pop.py .....                                          [ 71%]
testing/test_io.py ......                                                [ 79%]
testing/test_mpi.py s                                                    [ 80%]
testing/test_nest.py ..                                                  [ 82%]
testing/test_plots.py ......                                             [ 90%]
testing/test_random.py ..                                                [ 92%]
testing/test_rewire.py ....                                              [ 97%]
testing/test_weights.py ..                                               [100%]

=============================== warnings summary ===============================
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
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testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_global_clustering
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_plots.py::test_draw_network_options
testing/test_plots.py::test_hive_plot
  /usr/lib/python3/dist-packages/scipy/sparse/_index.py:126: SparseEfficiencyWarning:Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.

testing/test_analysis.py::test_swp
  /usr/lib/python3/dist-packages/graph_tool/topology/__init__.py:1950: DeprecationWarning:Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working

testing/test_nest.py::test_net_creation
  /home/build/NNGT/nngt/simulation/nest_graph.py:51: DeprecationWarning:invalid escape sequence \i

testing/test_nest.py::test_utils
  /usr/lib/python3.8/dist-packages/nest/lib/hl_api_helper.py:127: UserWarning:
  GetNodes is deprecated and will be removed in NEST 3.0. Use             GIDCollection instead.

testing/test_plots.py::test_hive_plot
  /home/build/NNGT/nngt/plot/plt_networks.py:966: UserWarning:tight_layout : falling back to Agg renderer

testing/test_plots.py::test_plot_spatial_alpha
  /home/build/NNGT/nngt/plot/plt_networks.py:667: UserWarning:tight_layout : falling back to Agg renderer

-- Docs: https://docs.pytest.org/en/latest/warnings.html
============= 79 passed, 3 skipped, 126 warnings in 164.25 seconds =============
+ GL=nx
+ coverage run -p -m pytest testing
============================= test session starts ==============================
platform linux -- Python 3.8.5, pytest-4.6.9, py-1.8.1, pluggy-0.13.0
rootdir: /home/build/NNGT
plugins: mpi-0.5
collecting ... 
collecting 0 items                                                             
collected 82 items                                                             

testing/test_analysis.py ..........                                      [ 12%]
testing/test_attributes.py ...........                                   [ 25%]
testing/test_basics.py ............                                      [ 40%]
testing/test_connect_group_type.py ...                                   [ 43%]
testing/test_examples.py s                                               [ 45%]
testing/test_gallery.py ..                                               [ 47%]
testing/test_generation.py .                                             [ 48%]
testing/test_generation2.py ...s......                                   [ 60%]
testing/test_graphclasses.py ....                                        [ 65%]
testing/test_group_pop.py .....                                          [ 71%]
testing/test_io.py ......                                                [ 79%]
testing/test_mpi.py s                                                    [ 80%]
testing/test_nest.py ..                                                  [ 82%]
testing/test_plots.py ......                                             [ 90%]
testing/test_random.py ..                                                [ 92%]
testing/test_rewire.py ....                                              [ 97%]
testing/test_weights.py ..                                               [100%]

=============================== warnings summary ===============================
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
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testing/test_analysis.py::test_clustering_parameters
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testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_global_clustering
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
  /usr/lib/python3/dist-packages/scipy/sparse/_index.py:126: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
    self._set_arrayXarray(i, j, x)

testing/test_nest.py::test_utils
  /usr/lib/python3.8/dist-packages/nest/lib/hl_api_helper.py:127: UserWarning:
  GetNodes is deprecated and will be removed in NEST 3.0. Use             GIDCollection instead.

testing/test_plots.py::test_draw_network_options
testing/test_plots.py::test_hive_plot
  /usr/lib/python3/dist-packages/scipy/sparse/_index.py:126: SparseEfficiencyWarning:Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.

testing/test_plots.py::test_hive_plot
  /home/build/NNGT/nngt/plot/plt_networks.py:839: RuntimeWarning:More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).

testing/test_plots.py::test_plot_spatial_alpha
  /home/build/NNGT/nngt/plot/plt_networks.py:169: RuntimeWarning:More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).

-- Docs: https://docs.pytest.org/en/latest/warnings.html
============= 79 passed, 3 skipped, 124 warnings in 623.93 seconds =============
+ GL=ig
+ coverage run -p -m pytest testing
============================= test session starts ==============================
platform linux -- Python 3.8.5, pytest-4.6.9, py-1.8.1, pluggy-0.13.0
rootdir: /home/build/NNGT
plugins: mpi-0.5
collecting ... 
collecting 0 items                                                             
collected 82 items                                                             

testing/test_analysis.py ..........                                      [ 12%]
testing/test_attributes.py ...........                                   [ 25%]
testing/test_basics.py ............                                      [ 40%]
testing/test_connect_group_type.py ...                                   [ 43%]
testing/test_examples.py s                                               [ 45%]
testing/test_gallery.py ..                                               [ 47%]
testing/test_generation.py .                                             [ 48%]
testing/test_generation2.py ...s......                                   [ 60%]
testing/test_graphclasses.py ....                                        [ 65%]
testing/test_group_pop.py .....                                          [ 71%]
testing/test_io.py ......                                                [ 79%]
testing/test_mpi.py s                                                    [ 80%]
testing/test_nest.py ..                                                  [ 82%]
testing/test_plots.py ......                                             [ 90%]
testing/test_random.py ..                                                [ 92%]
testing/test_rewire.py ....                                              [ 97%]
testing/test_weights.py ..                                               [100%]

=============================== warnings summary ===============================
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
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testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_global_clustering
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
  /usr/lib/python3/dist-packages/scipy/sparse/_index.py:126: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
    self._set_arrayXarray(i, j, x)

testing/test_graphclasses.py::TestGraphClasses::test_copy_clear
testing/test_graphclasses.py::TestGraphClasses::test_copy_clear
  /home/build/.local/lib/python3.8/site-packages/igraph/__init__.py:492: DeprecationWarning: Graph.delete_vertices(None) is deprecated since igraph 0.8.3, please use Graph.delete_vertices() instead
    return GraphBase.delete_edges(self, edge_seq)

testing/test_nest.py::test_utils
  /usr/lib/python3.8/dist-packages/nest/lib/hl_api_helper.py:127: UserWarning:
  GetNodes is deprecated and will be removed in NEST 3.0. Use             GIDCollection instead.

testing/test_plots.py::test_draw_network_options
testing/test_plots.py::test_hive_plot
  /usr/lib/python3/dist-packages/scipy/sparse/_index.py:126: SparseEfficiencyWarning:Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.

testing/test_plots.py::test_hive_plot
  /home/build/NNGT/nngt/plot/plt_networks.py:966: UserWarning:tight_layout : falling back to Agg renderer

testing/test_plots.py::test_plot_spatial_alpha
  /home/build/NNGT/nngt/plot/plt_networks.py:667: UserWarning:tight_layout : falling back to Agg renderer

-- Docs: https://docs.pytest.org/en/latest/warnings.html
============= 79 passed, 3 skipped, 126 warnings in 170.07 seconds =============
+ GL=nngt
+ coverage run -p -m pytest testing
============================= test session starts ==============================
platform linux -- Python 3.8.5, pytest-4.6.9, py-1.8.1, pluggy-0.13.0
rootdir: /home/build/NNGT
plugins: mpi-0.5
collecting ... 
collecting 0 items                                                             
collected 82 items                                                             

testing/test_analysis.py ........s.                                      [ 12%]
testing/test_attributes.py ...........                                   [ 25%]
testing/test_basics.py ............                                      [ 40%]
testing/test_connect_group_type.py ...                                   [ 43%]
testing/test_examples.py s                                               [ 45%]
testing/test_gallery.py ..                                               [ 47%]
testing/test_generation.py .                                             [ 48%]
testing/test_generation2.py ...s......                                   [ 60%]
testing/test_graphclasses.py ....                                        [ 65%]
testing/test_group_pop.py .....                                          [ 71%]
testing/test_io.py ......                                                [ 79%]
testing/test_mpi.py s                                                    [ 80%]
testing/test_nest.py ..                                                  [ 82%]
testing/test_plots.py ....s.                                             [ 90%]
testing/test_random.py ..                                                [ 92%]
testing/test_rewire.py ....                                              [ 97%]
testing/test_weights.py ..                                               [100%]

=============================== warnings summary ===============================
testing/test_analysis.py::test_binary_undirected_clustering
testing/test_analysis.py::test_binary_undirected_clustering
testing/test_analysis.py::test_binary_undirected_clustering
testing/test_analysis.py::test_binary_undirected_clustering
testing/test_analysis.py::test_binary_undirected_clustering
testing/test_analysis.py::test_binary_undirected_clustering
testing/test_analysis.py::test_binary_undirected_clustering
testing/test_analysis.py::test_binary_undirected_clustering
testing/test_analysis.py::test_binary_undirected_clustering
testing/test_analysis.py::test_binary_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
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testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
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testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_global_clustering
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
  /usr/lib/python3/dist-packages/scipy/sparse/_index.py:126: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
    self._set_arrayXarray(i, j, x)

testing/test_nest.py::test_utils
  /usr/lib/python3.8/dist-packages/nest/lib/hl_api_helper.py:127: UserWarning:
  GetNodes is deprecated and will be removed in NEST 3.0. Use             GIDCollection instead.

testing/test_plots.py::test_draw_network_options
  /usr/lib/python3/dist-packages/scipy/sparse/_index.py:126: SparseEfficiencyWarning:Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.

-- Docs: https://docs.pytest.org/en/latest/warnings.html
============= 77 passed, 5 skipped, 135 warnings in 155.51 seconds =============
+ GL=gt
+ OMP=2
+ coverage run -p -m pytest testing
============================= test session starts ==============================
platform linux -- Python 3.8.5, pytest-4.6.9, py-1.8.1, pluggy-0.13.0
rootdir: /home/build/NNGT
plugins: mpi-0.5
collecting ... 
collecting 0 items                                                             
collected 82 items                                                             

testing/test_analysis.py ..........                                      [ 12%]
testing/test_attributes.py ...........                                   [ 25%]
testing/test_basics.py ............                                      [ 40%]
testing/test_connect_group_type.py ...                                   [ 43%]
testing/test_examples.py .                                               [ 45%]
testing/test_gallery.py ..                                               [ 47%]
testing/test_generation.py .                                             [ 48%]
testing/test_generation2.py ...s......                                   [ 60%]
testing/test_graphclasses.py ....                                        [ 65%]
testing/test_group_pop.py .....                                          [ 71%]
testing/test_io.py ......                                                [ 79%]
testing/test_mpi.py s                                                    [ 80%]
testing/test_nest.py ..                                                  [ 82%]
testing/test_plots.py ......                                             [ 90%]
testing/test_random.py ..                                                [ 92%]
testing/test_rewire.py ....                                              [ 97%]
testing/test_weights.py ..                                               [100%]

=============================== warnings summary ===============================
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_undirected_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_weighted_directed_clustering
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_clustering_parameters
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_partial_directed_clustering
testing/test_analysis.py::test_global_clustering
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_swp
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_analysis.py::test_local_closure
testing/test_examples.py::TestExamples::test_examples
testing/test_plots.py::test_draw_network_options
testing/test_plots.py::test_hive_plot
  /usr/lib/python3/dist-packages/scipy/sparse/_index.py:126: SparseEfficiencyWarning:Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.

testing/test_analysis.py::test_swp
  /usr/lib/python3/dist-packages/graph_tool/topology/__init__.py:1950: DeprecationWarning:Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working

testing/test_nest.py::test_utils
  /usr/lib/python3.8/dist-packages/nest/lib/hl_api_helper.py:127: UserWarning:
  GetNodes is deprecated and will be removed in NEST 3.0. Use             GIDCollection instead.

testing/test_plots.py::test_hive_plot
  /home/build/NNGT/nngt/plot/plt_networks.py:966: UserWarning:tight_layout : falling back to Agg renderer

testing/test_plots.py::test_plot_spatial_alpha
  /home/build/NNGT/nngt/plot/plt_networks.py:667: UserWarning:tight_layout : falling back to Agg renderer

-- Docs: https://docs.pytest.org/en/latest/warnings.html
============= 80 passed, 2 skipped, 126 warnings in 152.30 seconds =============
+ GL=gt
+ OMP=0
+ MPI=1
+ mpirun -n 2 coverage run -p -m pytest --with-mpi testing
============================= test session starts ==============================
platform linux -- Python 3.8.5, pytest-4.6.9, py-1.8.1, pluggy-0.13.0
rootdir: /home/build/NNGT
plugins: mpi-0.5
collecting ... ============================= test session starts ==============================
platform linux -- Python 3.8.5, pytest-4.6.9, py-1.8.1, pluggy-0.13.0
rootdir: /home/build/NNGT
plugins: mpi-0.5
collecting ... 
collecting 0 items                                                             
collecting 0 items                                                             
collected 82 items                                                             

testing/test_analysis.py sss
collected 82 items                                                             
ss
testing/test_analysis.py sssssssss                                      [ 12%]
testing/test_attributes.py ssssss.s.s                                      [ 12%]
testing/test_attributes.py ss.....sssss                                   [ 25%]
testing/test_basics.py .sssss                                   [ 25%]
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testing/test_connect_group_type.py ss.                                   [ 43%]
testing/test_examples.py s                                               [ 45%]
testing/test_gallery.py ss                                               [ 47%]
testing/test_generation.py s                                             [ 48%]
testing/test_generation2.py sss.                                   [ 43%]
testing/test_examples.py s                                               [ 45%]
testing/test_gallery.py ss                                               [ 47%]
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testing/test_graphclasses.py ssssss                                   [ 60%]
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testing/test_group_pop.py .s.s.s.ss                                          [ 71%]                                        [ 65%]
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testing/test_group_pop.py s.ss.sss                                                [ 79%]
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testing/test_nest.py ss                                                  [ 82%]
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testing/test_rewire.py s                                                [ 92%]
testing/test_rewire.py sssss                                              [ 97%]
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testing/test_weights.py s.                                               [100%]
=============================== MPI Information ================================
rank: 1
size: 2
MPI version: 3.1
MPI library version: Open MPI v4.0.3, package: Debian OpenMPI, ident: 4.0.3, repo rev: v4.0.3, Mar 03, 2020
MPI vendor: Open MPI 4.0.3
mpi4py rc: 
 initialize: True
 threads: True
 thread_level: multiple
 finalize: None
 fast_reduce: True
 recv_mprobe: True
 errors: exception
mpi4py config:
 mpicc: /usr/bin/mpicc
 mpicxx: /usr/bin/mpicxx

==================== 20 passed, 62 skipped in 59.64 seconds ====================
.                                               [100%]
=============================== MPI Information ================================
rank: 0
size: 2
MPI version: 3.1
MPI library version: Open MPI v4.0.3, package: Debian OpenMPI, ident: 4.0.3, repo rev: v4.0.3, Mar 03, 2020
MPI vendor: Open MPI 4.0.3
mpi4py rc: 
 initialize: True
 threads: True
 thread_level: multiple
 finalize: None
 fast_reduce: True
 recv_mprobe: True
 errors: exception
mpi4py config:
 mpicc: /usr/bin/mpicc
 mpicxx: /usr/bin/mpicxx

==================== 20 passed, 62 skipped in 59.53 seconds ====================
+ coverage combine
+ coverage report
Name                                    Stmts   Miss Branch BrPart  Cover
-------------------------------------------------------------------------
nngt/__init__.py                          137     34     32      7    75%
nngt/analysis/__init__.py                   7      0      0      0   100%
nngt/analysis/activity_analysis.py        124    106     52      0    10%
nngt/analysis/bayesian_blocks.py          139    116     48      0    12%
nngt/analysis/clustering.py               265      4    118      4    98%
nngt/analysis/graph_analysis.py           220     94     94     23    54%
nngt/analysis/gt_functions.py             165     10     76      8    93%
nngt/analysis/ig_functions.py             119      6     46      7    92%
nngt/analysis/nngt_functions.py            21      0      8      0   100%
nngt/analysis/nx_functions.py             160     13     78      5    91%
nngt/core/__init__.py                       9      0      0      0   100%
nngt/core/connections.py                  104     20     44      9    78%
nngt/core/graph.py                        543     69    286     37    84%
nngt/core/graph_interface.py              129     39     44      4    66%
nngt/core/group_structure.py              322     92    118     10    65%
nngt/core/gt_graph.py                     412     40    254     24    88%
nngt/core/ig_graph.py                     290     32    170     15    87%
nngt/core/networks.py                     141     54     44      2    54%
nngt/core/neural_pop_group.py             354     83    122     16    72%
nngt/core/nngt_graph.py                   435     36    240     16    90%
nngt/core/nx_graph.py                     374     26    214     15    92%
nngt/core/spatial_graph.py                 63     14     20      4    69%
nngt/generation/__init__.py                 8      0      0      0   100%
nngt/generation/cconnect.pyxbld             6      0      0      0   100%
nngt/generation/connect_algorithms.py     535     93    194     16    79%
nngt/generation/connectors.py              93      6     60      8    91%
nngt/generation/graph_connectivity.py     230     23     62     23    84%
nngt/generation/mpi_connect.py            202     20     58      5    88%
nngt/generation/rewiring.py               165      6     80      8    93%
nngt/geospatial/__init__.py                 3      3      0      0     0%
nngt/geospatial/_cartopy_ne.py             41     41      6      0     0%
nngt/geospatial/countries.py              135    135     58      0     0%
nngt/geospatial/plot.py                    83     83     60      0     0%
nngt/io/__init__.py                         1      0      0      0   100%
nngt/io/graph_loading.py                   86     13     32      5    83%
nngt/io/graph_saving.py                   100     25     50      6    74%
nngt/io/io_helpers.py                      18      2     12      2    87%
nngt/io/loading_helpers.py                193     21    128     13    85%
nngt/io/saving_helpers.py                  70      5     28      3    92%
nngt/lib/__init__.py                        7      0      0      0   100%
nngt/lib/_frozendict.py                     9      5      2      0    36%
nngt/lib/connect_tools.py                 186     30    112     16    80%
nngt/lib/constants.py                      12      0      0      0   100%
nngt/lib/converters.py                     51     28     22      0    40%
nngt/lib/decorator.py                     257    118    100     18    51%
nngt/lib/errors.py                          5      1      0      0    80%
nngt/lib/graph_backends.py                122     13     18      1    89%
nngt/lib/graph_helpers.py                 217     13    136     16    91%
nngt/lib/logger.py                         55      4     18      5    85%
nngt/lib/nngt_config.py                   231     20    114     11    90%
nngt/lib/rng_tools.py                     106     17     30      7    81%
nngt/lib/sorting.py                        93     86     36      0     5%
nngt/lib/test_functions.py                114     31     24      0    73%
nngt/plot/__init__.py                      14      1      2      1    88%
nngt/plot/animations.py                   430    393    144      0     6%
nngt/plot/custom_plt.py                    79     16     18      4    77%
nngt/plot/hive_helpers.py                 216     26    118     10    83%
nngt/plot/plt_networks.py                 848    256    502    101    65%
nngt/plot/plt_properties.py               421    167    194     54    55%
-------------------------------------------------------------------------
TOTAL                                    9975   2589   4526    539    72%
Build complete: success 5 months ago (took 27 minutes)