#527962 cancelled

Owner
~tfardet
Created
5 months ago
Updated
5 months ago
Build manifest
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Tasks

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_apply_patch view log »
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setup view log »
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setup
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[#527962] 2021/06/18 12:20:20 Booting image ubuntu/lts (default) on port 22101
[#527962] 2021/06/18 12:20:22 Waiting for guest to settle
[#527962] 2021/06/18 12:20:30 Sending tasks
[#527962] 2021/06/18 12:20:31 Sending build environment
[#527962] 2021/06/18 12:20:31 Cloning repositories
Cloning into 'NNGT'...
+ cd NNGT
+ git submodule update --init
Submodule 'nngt/geometry' (https://github.com/SENeC-Initiative/PyNCulture.git) registered for path 'nngt/geometry'
Submodule 'nngt/plot/chord_diag' (https://codeberg.org/tfardet/mpl_chord_diagram.git) registered for path 'nngt/plot/chord_diag'
Cloning into '/home/build/NNGT/nngt/geometry'...
Cloning into '/home/build/NNGT/nngt/plot/chord_diag'...
Submodule path 'nngt/geometry': checked out '4c0bedd21a4af0c1f80aae58a7ef16b1ebd7d54f'
Submodule path 'nngt/plot/chord_diag': checked out 'f25f27e3b361d9665dbebf514c846105974d61d9'
[#527962] 2021/06/18 12:20:42 Running task _apply_patch
[#527962] 2021/06/18 12:20:43 Running task check
[#527962] 2021/06/18 12:20:43 Running task setup
[#527962] 2021/06/18 12:21:11 Processing post-cancelled triggers for job group...
[#527962] 2021/06/18 12:21:11 Sent build results email to tfardet <tanguyfardet@protonmail.com>
[#527962] 2021/06/18 12:21:11 Processing post-cancelled triggers...
[#527962] 2021/06/18 12:21:11 Sending webhook...
[#527962] 2021/06/18 12:21:12 Webhook response: 200
[#527962] 2021/06/18 12:21:12 Thanks!
[#527962] 2021/06/18 12:21:12 Build failed.
[#527962] 2021/06/18 12:21:12 The build environment will be kept alive for 10 minutes.
[#527962] 2021/06/18 12:21:12 To log in with SSH and examine it, use the following command:
[#527962] 2021/06/18 12:21:12 
[#527962] 2021/06/18 12:21:12 	ssh -t builds@yui.runners.sr.ht connect 527962
[#527962] 2021/06/18 12:21:12 
[#527962] 2021/06/18 12:21:12 After logging in, the deadline is increased to your remaining build time.
[#527962] 2021/06/18 12:21:12 Build cancelled. Terminating build environment.
[#527962] 2021/06/18 12:21:12 Error: Running task on guest: signal: killed
_apply_patch
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+ echo Applying patch from lists.sr.ht
Applying patch from lists.sr.ht
+ git config --global user.name builds.sr.ht
+ git config --global user.email builds@sr.ht
+ cd NNGT
+ curl -sS https://lists.sr.ht/~tfardet/nngt-developers/patches/23380/mbox
+ git am -3 /tmp/23380.patch
Applying: Simulation/Analysis - NEST3 support and bugfix for SWP
check
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+ cd NNGT
+ python3 extra/check_headers.py
setup
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+ sudo sh -c 'echo -n "deb https://downloads.skewed.de/apt focal main\n" >> /etc/apt/sources.list'
+ sudo apt-key adv --keyserver keys.openpgp.org --recv-key 612DEFB798507F25
Executing: /tmp/apt-key-gpghome.cMQCIIGlG7/gpg.1.sh --keyserver keys.openpgp.org --recv-key 612DEFB798507F25
gpg: key 612DEFB798507F25: public key "Tiago de Paula Peixoto <tiago@skewed.de>" imported
gpg: Total number processed: 1
gpg:               imported: 1
+ sudo apt-get update -qq
+ sudo apt install -y gcc libcairo2-dev pkg-config build-essential autoconf automake python3-dev libblas-dev

Reading package lists... 0%

Reading package lists... 100%

Reading package lists... Done


Building dependency tree... 0%

Building dependency tree... 0%

Building dependency tree... 50%

Building dependency tree... 50%

Building dependency tree       


Reading state information... 0%

Reading state information... 0%

Reading state information... Done

gcc is already the newest version (4:9.3.0-1ubuntu2).
gcc set to manually installed.
build-essential is already the newest version (12.8ubuntu1.1).
The following additional packages will be installed:
  autotools-dev fontconfig-config fonts-dejavu-core libblas3 libblkid-dev
  libblkid1 libcairo-gobject2 libcairo-script-interpreter2 libcairo2
  libexpat1-dev libffi-dev libfontconfig1 libfontconfig1-dev libfreetype-dev
  libfreetype6-dev libglib2.0-0 libglib2.0-bin libglib2.0-dev
  libglib2.0-dev-bin libice-dev libice6 liblzo2-2 libmount-dev libmount1
  libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2
  libpcre3-dev libpcre32-3 libpcrecpp0v5 libpixman-1-0 libpixman-1-dev
  libpng-dev libpng-tools libpthread-stubs0-dev libpython3-dev libpython3.8
  libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libselinux1-dev
  libsepol1-dev libsigsegv2 libsm-dev libsm6 libuuid1 libx11-dev libxau-dev
  libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1-dev
  libxdmcp-dev libxext-dev libxrender-dev libxrender1 m4 python3-distutils
  python3-lib2to3 python3.8 python3.8-dev python3.8-minimal uuid-dev
  x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev
  xorg-sgml-doctools xtrans-dev zlib1g zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc libtool gettext liblapack-doc
  libcairo2-doc freetype2-doc libgirepository1.0-dev libglib2.0-doc
  libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils libice-doc
  libsm-doc libx11-doc libxcb-doc libxext-doc m4-doc python3.8-venv
  python3.8-doc binfmt-support
Recommended packages:
  uuid-runtime
The following NEW packages will be installed:
  autoconf automake autotools-dev fontconfig-config fonts-dejavu-core
  libblas-dev libblas3 libblkid-dev libcairo-gobject2
  libcairo-script-interpreter2 libcairo2 libcairo2-dev libexpat1-dev
  libffi-dev libfontconfig1 libfontconfig1-dev libfreetype-dev
  libfreetype6-dev libglib2.0-bin libglib2.0-dev libglib2.0-dev-bin libice-dev
  libice6 liblzo2-2 libmount-dev libpcre16-3 libpcre2-16-0 libpcre2-32-0
  libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5
  libpixman-1-0 libpixman-1-dev libpng-dev libpng-tools libpthread-stubs0-dev
  libpython3-dev libpython3.8 libpython3.8-dev libselinux1-dev libsepol1-dev
  libsigsegv2 libsm-dev libsm6 libx11-dev libxau-dev libxcb-render0
  libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1-dev libxdmcp-dev
  libxext-dev libxrender-dev libxrender1 m4 pkg-config python3-dev
  python3-distutils python3-lib2to3 python3.8-dev uuid-dev x11-common
  x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools
  xtrans-dev zlib1g-dev
The following packages will be upgraded:
  libblkid1 libglib2.0-0 libmount1 libpython3.8-minimal libpython3.8-stdlib
  libuuid1 python3.8 python3.8-minimal zlib1g
9 upgraded, 71 newly installed, 0 to remove and 66 not upgraded.
Need to get 25.0 MB of archives.
After this operation, 81.0 MB of additional disk space will be used.

0% [Working]
            
Get:1 http://archive.ubuntu.com/ubuntu focal-security/main amd64 python3.8 amd64 3.8.5-1~20.04.3 [373 kB]

0% [1 python3.8 0 B/373 kB 0%]
                              
1% [Working]
            
Get:2 http://archive.ubuntu.com/ubuntu focal-security/main amd64 libpython3.8-stdlib amd64 3.8.5-1~20.04.3 [1671 kB]

1% [2 libpython3.8-stdlib 4096 B/1671 kB 0%]
                                            
7% [Waiting for headers]
                        
Get:3 http://archive.ubuntu.com/ubuntu focal-security/main amd64 python3.8-minimal amd64 3.8.5-1~20.04.3 [1897 kB]

7% [3 python3.8-minimal 44.1 kB/1897 kB 2%]
                                           
13% [Waiting for headers]
                         
Get:4 http://archive.ubuntu.com/ubuntu focal-security/main amd64 libpython3.8-minimal amd64 3.8.5-1~20.04.3 [715 kB]

13% [4 libpython3.8-minimal 24.0 kB/715 kB 3%]
                                              
16% [Waiting for headers]
                         
Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libuuid1 amd64 2.34-0.1ubuntu9.1 [20.0 kB]

16% [5 libuuid1 0 B/20.0 kB 0%]
                               
16% [Working]
             
Get:6 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 zlib1g amd64 1:1.2.11.dfsg-2ubuntu1.2 [53.6 kB]

16% [6 zlib1g 0 B/53.6 kB 0%]
                             
17% [Waiting for headers]
                         
Get:7 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libblkid1 amd64 2.34-0.1ubuntu9.1 [137 kB]

17% [7 libblkid1 17.7 kB/137 kB 13%]
                                    
17% [Waiting for headers]
                         
Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libmount1 amd64 2.34-0.1ubuntu9.1 [149 kB]

17% [8 libmount1 4096 B/149 kB 3%]
                                  
18% [Waiting for headers]
                         
Get:9 http://archive.ubuntu.com/ubuntu focal-security/main amd64 libglib2.0-0 amd64 2.64.6-1~ubuntu20.04.3 [1285 kB]

18% [9 libglib2.0-0 16.2 kB/1285 kB 1%]
                                       
22% [Waiting for headers]
                         
Get:10 http://archive.ubuntu.com/ubuntu focal/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB]

23% [Waiting for headers]
                         
Get:11 http://archive.ubuntu.com/ubuntu focal/main amd64 m4 amd64 1.4.18-4 [199 kB]

23% [11 m4 17.1 kB/199 kB 9%]
                             
24% [Waiting for headers]
                         
Get:12 http://archive.ubuntu.com/ubuntu focal/main amd64 autoconf all 2.69-11.1 [321 kB]

24% [12 autoconf 6035 B/321 kB 2%]
                                  
25% [Waiting for headers]
                         
Get:13 http://archive.ubuntu.com/ubuntu focal/main amd64 autotools-dev all 20180224.1 [39.6 kB]

25% [13 autotools-dev 7150 B/39.6 kB 18%]
                                         
25% [Waiting for headers]
                         
Get:14 http://archive.ubuntu.com/ubuntu focal/main amd64 automake all 1:1.16.1-4ubuntu6 [522 kB]

25% [14 automake 3427 B/522 kB 1%]
                                  
27% [Waiting for headers]
                         
Get:15 http://archive.ubuntu.com/ubuntu focal/main amd64 fonts-dejavu-core all 2.37-1 [1041 kB]

27% [15 fonts-dejavu-core 4544 B/1041 kB 0%]
                                            
31% [Waiting for headers]
                         
Get:16 http://archive.ubuntu.com/ubuntu focal/main amd64 fontconfig-config all 2.13.1-2ubuntu3 [28.8 kB]

31% [16 fontconfig-config 8586 B/28.8 kB 30%]
                                             
31% [Waiting for headers]
                         
Get:17 http://archive.ubuntu.com/ubuntu focal/main amd64 libblas3 amd64 3.9.0-1build1 [142 kB]

31% [17 libblas3 0 B/142 kB 0%]
                               
32% [Working]
             
Get:18 http://archive.ubuntu.com/ubuntu focal/main amd64 libblas-dev amd64 3.9.0-1build1 [147 kB]

32% [18 libblas-dev 0 B/147 kB 0%]
                                  
33% [Waiting for headers]
                         
Get:19 http://archive.ubuntu.com/ubuntu focal/main amd64 libfontconfig1 amd64 2.13.1-2ubuntu3 [114 kB]

33% [19 libfontconfig1 0 B/114 kB 0%]
                                     
33% [Waiting for headers]
                         
Get:20 http://archive.ubuntu.com/ubuntu focal/main amd64 libpixman-1-0 amd64 0.38.4-0ubuntu1 [227 kB]

33% [20 libpixman-1-0 7926 B/227 kB 3%]
                                       
34% [Waiting for headers]
                         
Get:21 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb-render0 amd64 1.14-2 [14.8 kB]

34% [21 libxcb-render0 5497 B/14.8 kB 37%]
                                          
34% [Waiting for headers]
                         
Get:22 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb-shm0 amd64 1.14-2 [5584 B]

34% [22 libxcb-shm0 4857 B/5584 B 87%]
                                      
35% [Waiting for headers]
                         
Get:23 http://archive.ubuntu.com/ubuntu focal/main amd64 libxrender1 amd64 1:0.9.10-1 [18.7 kB]

35% [23 libxrender1 7680 B/18.7 kB 41%]
                                       
35% [Waiting for headers]
                         
Get:24 http://archive.ubuntu.com/ubuntu focal/main amd64 libcairo2 amd64 1.16.0-4ubuntu1 [583 kB]

35% [24 libcairo2 4096 B/583 kB 1%]
                                   
37% [Waiting for headers]
                         
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37% [25 libcairo-gobject2 7290 B/17.2 kB 42%]
                                             
37% [Waiting for headers]
                         
Get:26 http://archive.ubuntu.com/ubuntu focal/main amd64 liblzo2-2 amd64 2.10-2 [50.8 kB]

37% [26 liblzo2-2 4293 B/50.8 kB 8%]
                                    
38% [Waiting for headers]
                         
Get:27 http://archive.ubuntu.com/ubuntu focal/main amd64 libcairo-script-interpreter2 amd64 1.16.0-4ubuntu1 [54.2 kB]

38% [27 libcairo-script-interpreter2 5372 B/54.2 kB 10%]
                                                        
38% [Waiting for headers]
                         
Get:28 http://archive.ubuntu.com/ubuntu focal/main amd64 libexpat1-dev amd64 2.2.9-1build1 [116 kB]

38% [28 libexpat1-dev 5873 B/116 kB 5%]
                                       
39% [Waiting for headers]
                         
Get:29 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu1.2 [155 kB]

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Get:30 http://archive.ubuntu.com/ubuntu focal/main amd64 libpng-dev amd64 1.6.37-2 [175 kB]

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Get:31 http://archive.ubuntu.com/ubuntu focal-security/main amd64 libfreetype-dev amd64 2.10.1-2ubuntu0.1 [493 kB]

40% [31 libfreetype-dev 4524 B/493 kB 1%]
                                         
42% [Waiting for headers]
                         
Get:32 http://archive.ubuntu.com/ubuntu focal-security/main amd64 libfreetype6-dev amd64 2.10.1-2ubuntu0.1 [9812 B]

42% [32 libfreetype6-dev 8220 B/9812 B 84%]
                                           
43% [Waiting for headers]
                         
Get:33 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 uuid-dev amd64 2.34-0.1ubuntu9.1 [33.6 kB]

43% [33 uuid-dev 8263 B/33.6 kB 25%]
                                    
43% [Waiting for headers]
                         
Get:34 http://archive.ubuntu.com/ubuntu focal/main amd64 pkg-config amd64 0.29.1-0ubuntu4 [45.5 kB]

43% [34 pkg-config 6246 B/45.5 kB 14%]
                                      
43% [Waiting for headers]
                         
Get:35 http://archive.ubuntu.com/ubuntu focal/main amd64 libfontconfig1-dev amd64 2.13.1-2ubuntu3 [731 kB]

43% [35 libfontconfig1-dev 2463 B/731 kB 0%]
                                            
46% [Waiting for headers]
                         
Get:36 http://archive.ubuntu.com/ubuntu focal/main amd64 xorg-sgml-doctools all 1:1.11-1 [12.9 kB]

46% [36 xorg-sgml-doctools 6782 B/12.9 kB 52%]
                                              
46% [Waiting for headers]
                         
Get:37 http://archive.ubuntu.com/ubuntu focal/main amd64 x11proto-dev all 2019.2-1ubuntu1 [594 kB]

46% [37 x11proto-dev 6605 B/594 kB 1%]
                                      
48% [Waiting for headers]
                         
Get:38 http://archive.ubuntu.com/ubuntu focal/main amd64 x11proto-core-dev all 2019.2-1ubuntu1 [2620 B]

49% [Waiting for headers]
                         
Get:39 http://archive.ubuntu.com/ubuntu focal/main amd64 libxau-dev amd64 1:1.0.9-0ubuntu1 [9552 B]

49% [39 libxau-dev 6410 B/9552 B 67%]
                                     
49% [Waiting for headers]
                         
Get:40 http://archive.ubuntu.com/ubuntu focal/main amd64 libxdmcp-dev amd64 1:1.1.3-0ubuntu1 [25.3 kB]

49% [40 libxdmcp-dev 11.1 kB/25.3 kB 44%]
                                         
49% [Waiting for headers]
                         
Get:41 http://archive.ubuntu.com/ubuntu focal/main amd64 xtrans-dev all 1.4.0-1 [68.9 kB]

49% [41 xtrans-dev 4271 B/68.9 kB 6%]
                                     
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Get:42 http://archive.ubuntu.com/ubuntu focal/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5384 B]

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Get:43 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb1-dev amd64 1.14-2 [80.5 kB]

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Get:44 http://archive.ubuntu.com/ubuntu focal-security/main amd64 libx11-dev amd64 2:1.6.9-2ubuntu1.2 [647 kB]

51% [44 libx11-dev 6522 B/647 kB 1%]
                                    
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53% [45 libxrender-dev 10.6 kB/24.9 kB 43%]
                                           
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Get:62 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libmount-dev amd64 2.34-0.1ubuntu9.1 [176 kB]

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Get:63 http://archive.ubuntu.com/ubuntu focal/main amd64 libpcre16-3 amd64 2:8.39-12build1 [150 kB]

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Get:64 http://archive.ubuntu.com/ubuntu focal/main amd64 libpcre32-3 amd64 2:8.39-12build1 [140 kB]

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Get:67 http://archive.ubuntu.com/ubuntu focal/main amd64 libsepol1-dev amd64 3.0-1 [325 kB]

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Get:68 http://archive.ubuntu.com/ubuntu focal/main amd64 libpcre2-16-0 amd64 10.34-7 [181 kB]

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Get:69 http://archive.ubuntu.com/ubuntu focal/main amd64 libpcre2-32-0 amd64 10.34-7 [169 kB]

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Get:70 http://archive.ubuntu.com/ubuntu focal/main amd64 libpcre2-posix2 amd64 10.34-7 [5992 B]

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Get:71 http://archive.ubuntu.com/ubuntu focal/main amd64 libpcre2-dev amd64 10.34-7 [670 kB]

                                           
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71% [72 libselinux1-dev 4323 B/151 kB 3%]
                                         
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Get:73 http://archive.ubuntu.com/ubuntu focal-security/main amd64 libglib2.0-dev amd64 2.64.6-1~ubuntu20.04.3 [1505 kB]

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Get:74 http://archive.ubuntu.com/ubuntu focal/main amd64 libcairo2-dev amd64 1.16.0-4ubuntu1 [627 kB]

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79% [Waiting for headers]
                         
Get:75 http://archive.ubuntu.com/ubuntu focal/main amd64 libpng-tools amd64 1.6.37-2 [26.1 kB]

79% [75 libpng-tools 16.6 kB/26.1 kB 64%]
                                         
79% [Waiting for headers]
                         
Get:76 http://archive.ubuntu.com/ubuntu focal-security/main amd64 libpython3.8 amd64 3.8.5-1~20.04.3 [1624 kB]

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85% [Waiting for headers]
                         
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98% [Waiting for headers]
                         
Get:79 http://archive.ubuntu.com/ubuntu focal-security/main amd64 python3.8-dev amd64 3.8.5-1~20.04.3 [514 kB]

98% [79 python3.8-dev 17.9 kB/514 kB 3%]
                                        
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Get:80 http://archive.ubuntu.com/ubuntu focal/main amd64 python3-dev amd64 3.8.2-0ubuntu2 [1212 B]

                          
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Setting up libpython3.8-minimal:amd64 (3.8.5-1~20.04.3) ...
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No schema files found: doing nothing.
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update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Setting up libsepol1-dev:amd64 (3.0-1) ...
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Setting up liblzo2-2:amd64 (2.10-2) ...
Setting up libxcb-shm0:amd64 (1.14-2) ...
Setting up libffi-dev:amd64 (3.3-4) ...
Setting up libpthread-stubs0-dev:amd64 (0.4-1) ...
Setting up libpcre2-16-0:amd64 (10.34-7) ...
Setting up xtrans-dev (1.4.0-1) ...
Setting up autotools-dev (20180224.1) ...
Setting up libpcre2-32-0:amd64 (10.34-7) ...
Setting up libblas3:amd64 (3.9.0-1build1) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
Setting up libexpat1-dev:amd64 (2.2.9-1build1) ...
Setting up uuid-dev:amd64 (2.34-0.1ubuntu9.1) ...
Setting up libsigsegv2:amd64 (2.12-2) ...
Setting up libpcre32-3:amd64 (2:8.39-12build1) ...
Setting up pkg-config (0.29.1-0ubuntu4) ...
Setting up fonts-dejavu-core (2.37-1) ...
Setting up libpcre2-posix2:amd64 (10.34-7) ...
Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu1.2) ...
Setting up python3.8-minimal (3.8.5-1~20.04.3) ...
Setting up xorg-sgml-doctools (1:1.11-1) ...
Setting up libpython3.8-stdlib:amd64 (3.8.5-1~20.04.3) ...
Setting up python3.8 (3.8.5-1~20.04.3) ...
Setting up python3-lib2to3 (3.8.10-0ubuntu1~20.04) ...
Setting up libblas-dev:amd64 (3.9.0-1build1) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
Setting up python3-distutils (3.8.10-0ubuntu1~20.04) ...
Setting up x11proto-dev (2019.2-1ubuntu1) ...
Setting up libglib2.0-dev-bin (2.64.6-1~ubuntu20.04.3) ...
Setting up libblkid-dev:amd64 (2.34-0.1ubuntu9.1) ...
Setting up libice6:amd64 (2:1.0.10-0ubuntu1) ...
Setting up libxau-dev:amd64 (1:1.0.9-0ubuntu1) ...
Setting up libpcre2-dev:amd64 (10.34-7) ...
Setting up libice-dev:amd64 (2:1.0.10-0ubuntu1) ...
Setting up libselinux1-dev:amd64 (3.0-1build2) ...
Setting up libpcre3-dev:amd64 (2:8.39-12build1) ...
Setting up fontconfig-config (2.13.1-2ubuntu3) ...
Setting up libpng-dev:amd64 (1.6.37-2) ...
Setting up m4 (1.4.18-4) ...
Setting up libfreetype-dev:amd64 (2.10.1-2ubuntu0.1) ...
Setting up libxdmcp-dev:amd64 (1:1.1.3-0ubuntu1) ...
Setting up x11proto-core-dev (2019.2-1ubuntu1) ...
Setting up libpython3.8:amd64 (3.8.5-1~20.04.3) ...
Setting up autoconf (2.69-11.1) ...
Setting up x11proto-xext-dev (2019.2-1ubuntu1) ...
Setting up libfontconfig1:amd64 (2.13.1-2ubuntu3) ...
Setting up libsm6:amd64 (2:1.2.3-1) ...
Setting up libmount-dev:amd64 (2.34-0.1ubuntu9.1) ...
Setting up automake (1:1.16.1-4ubuntu6) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libxcb1-dev:amd64 (1.14-2) ...
Setting up libsm-dev:amd64 (2:1.2.3-1) ...
Setting up libx11-dev:amd64 (2:1.6.9-2ubuntu1.2) ...
Setting up libcairo2:amd64 (1.16.0-4ubuntu1) ...
Setting up libfreetype6-dev:amd64 (2.10.1-2ubuntu0.1) ...
Setting up libxcb-shm0-dev:amd64 (1.14-2) ...
Setting up libglib2.0-dev:amd64 (2.64.6-1~ubuntu20.04.3) ...
Setting up libpython3.8-dev:amd64 (3.8.5-1~20.04.3) ...
Setting up libxcb-render0-dev:amd64 (1.14-2) ...
Setting up python3.8-dev (3.8.5-1~20.04.3) ...
Setting up libxext-dev:amd64 (2:1.3.4-0ubuntu1) ...
Setting up libcairo-gobject2:amd64 (1.16.0-4ubuntu1) ...
Setting up libxrender-dev:amd64 (1:0.9.10-1) ...
Setting up libcairo-script-interpreter2:amd64 (1.16.0-4ubuntu1) ...
Setting up libfontconfig1-dev:amd64 (2.13.1-2ubuntu3) ...
Setting up libpython3-dev:amd64 (3.8.2-0ubuntu2) ...
Setting up python3-dev (3.8.2-0ubuntu2) ...
Setting up libcairo2-dev:amd64 (1.16.0-4ubuntu1) ...
Processing triggers for libc-bin (2.31-0ubuntu9) ...
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Processing triggers for mime-support (3.64ubuntu1) ...
+ sudo apt install -y liblapack-dev libatlas-base-dev gfortran libxml2-dev openmpi-bin libopenmpi-dev libgmp-dev

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Reading package lists... Done


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Building dependency tree       


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Reading state information... Done

The following additional packages will be installed:
  gfortran-9 ibverbs-providers icu-devtools libatlas3-base libcaf-openmpi-3
  libcoarrays-dev libcoarrays-openmpi-dev libevent-2.1-7 libevent-core-2.1-7
  libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7
  libevent-pthreads-2.1-7 libfabric1 libgfortran-9-dev libgfortran5
  libgmpxx4ldbl libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev
  libibverbs1 libicu-dev liblapack3 libltdl-dev libltdl7 libnl-3-dev
  libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi3
  libpciaccess0 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libtool
  libxml2 libxnvctrl0 ocl-icd-libopencl1 openmpi-common
Suggested packages:
  gfortran-multilib gfortran-doc gfortran-9-multilib gfortran-9-doc
  libatlas-doc liblapack-doc gmp-doc libgmp10-doc libmpfr-dev
  libhwloc-contrib-plugins icu-doc libtool-doc openmpi-doc pciutils gcj-jdk
  opencl-icd
The following NEW packages will be installed:
  gfortran gfortran-9 ibverbs-providers icu-devtools libatlas-base-dev
  libatlas3-base libcaf-openmpi-3 libcoarrays-dev libcoarrays-openmpi-dev
  libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7
  libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfabric1 libgfortran-9-dev
  libgfortran5 libgmp-dev libgmpxx4ldbl libhwloc-dev libhwloc-plugins
  libhwloc15 libibverbs-dev libibverbs1 libicu-dev liblapack-dev liblapack3
  libltdl-dev libltdl7 libnl-3-dev libnl-route-3-200 libnl-route-3-dev
  libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpmix2
  libpsm-infinipath1 libpsm2-2 librdmacm1 libtool libxml2-dev libxnvctrl0
  ocl-icd-libopencl1 openmpi-bin openmpi-common
The following packages will be upgraded:
  libxml2
1 upgraded, 48 newly installed, 0 to remove and 65 not upgraded.
Need to get 41.8 MB of archives.
After this operation, 198 MB of additional disk space will be used.

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2% [2 libnuma1 5511 B/20.8 kB 26%]
                                  
2% [Waiting for headers]
                        
Get:3 http://archive.ubuntu.com/ubuntu focal-security/main amd64 libgfortran5 amd64 10.2.0-5ubuntu1~20.04 [736 kB]

2% [3 libgfortran5 6957 B/736 kB 1%]
                                    
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Get:5 http://archive.ubuntu.com/ubuntu focal-security/main amd64 gfortran-9 amd64 9.3.0-17ubuntu1~20.04 [7921 kB]

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Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 gfortran amd64 4:9.3.0-1ubuntu2 [1372 B]

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Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 libnl-route-3-200 amd64 3.4.0-1 [149 kB]

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Get:8 http://archive.ubuntu.com/ubuntu focal/main amd64 libibverbs1 amd64 28.0-1ubuntu1 [53.6 kB]

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Get:9 http://archive.ubuntu.com/ubuntu focal/main amd64 ibverbs-providers amd64 28.0-1ubuntu1 [232 kB]

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Get:10 http://archive.ubuntu.com/ubuntu focal/main amd64 icu-devtools amd64 66.1-2ubuntu2 [188 kB]

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Get:11 http://archive.ubuntu.com/ubuntu focal/universe amd64 libatlas3-base amd64 3.10.3-8ubuntu7 [3736 kB]

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Get:12 http://archive.ubuntu.com/ubuntu focal/universe amd64 libatlas-base-dev amd64 3.10.3-8ubuntu7 [4066 kB]

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Get:13 http://archive.ubuntu.com/ubuntu focal/main amd64 libevent-2.1-7 amd64 2.1.11-stable-1 [138 kB]

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Get:34 http://archive.ubuntu.com/ubuntu focal/main amd64 libevent-openssl-2.1-7 amd64 2.1.11-stable-1 [14.3 kB]

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Get:36 http://archive.ubuntu.com/ubuntu focal/main amd64 libgmpxx4ldbl amd64 2:6.2.0+dfsg-4 [9128 B]

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Get:38 http://archive.ubuntu.com/ubuntu focal/main amd64 libicu-dev amd64 66.1-2ubuntu2 [9450 kB]

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Get:39 http://archive.ubuntu.com/ubuntu focal/main amd64 liblapack3 amd64 3.9.0-1build1 [2154 kB]

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Get:41 http://archive.ubuntu.com/ubuntu focal/main amd64 libltdl-dev amd64 2.4.6-14 [162 kB]

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Get:42 http://archive.ubuntu.com/ubuntu focal/main amd64 libnl-3-dev amd64 3.4.0-1 [92.2 kB]

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Get:43 http://archive.ubuntu.com/ubuntu focal/main amd64 libnl-route-3-dev amd64 3.4.0-1 [166 kB]

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Get:44 http://archive.ubuntu.com/ubuntu focal/main amd64 libtool all 2.4.6-14 [161 kB]

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Get:45 http://archive.ubuntu.com/ubuntu focal-security/main amd64 libxml2-dev amd64 2.9.10+dfsg-5ubuntu0.20.04.1 [735 kB]

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Get:46 http://archive.ubuntu.com/ubuntu focal/main amd64 libnuma-dev amd64 2.0.12-1 [32.4 kB]

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Get:47 http://archive.ubuntu.com/ubuntu focal/universe amd64 libhwloc-dev amd64 2.1.0+dfsg-4 [205 kB]

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Get:48 http://archive.ubuntu.com/ubuntu focal/main amd64 libibverbs-dev amd64 28.0-1ubuntu1 [444 kB]

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Get:49 http://archive.ubuntu.com/ubuntu focal/universe amd64 libopenmpi-dev amd64 4.0.3-0ubuntu1 [798 kB]

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