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[#1258324] 2024/06/23 06:45:11 Booting image ubuntu/lts (default) on port 22947 [#1258324] 2024/06/23 06:45:11 Waiting for guest to settle [#1258324] 2024/06/23 06:45:19 Sending tasks [#1258324] 2024/06/23 06:45:22 Sending build environment [#1258324] 2024/06/23 06:45:22 Sending secrets [#1258324] 2024/06/23 06:45:22 Resolving secret 69332acb-b779-4bb2-ae8a-719f8e150ace [#1258324] 2024/06/23 06:45:23 Installing packages Warning: Permanently added '[localhost]:22947' (ED25519) to the list of known hosts. Hit:1 http://archive.ubuntu.com/ubuntu jammy InRelease Get:2 http://archive.ubuntu.com/ubuntu jammy-security InRelease [129 kB] Get:3 http://archive.ubuntu.com/ubuntu jammy-updates InRelease [128 kB] Hit:4 http://archive.ubuntu.com/ubuntu jammy-backports InRelease Get:5 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 Packages [1526 kB] Get:6 http://archive.ubuntu.com/ubuntu jammy-security/main Translation-en [261 kB] Get:7 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 Packages [860 kB] Get:8 http://archive.ubuntu.com/ubuntu jammy-security/universe Translation-en [167 kB] Get:9 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 Packages [1734 kB] Get:10 http://archive.ubuntu.com/ubuntu jammy-updates/universe amd64 Packages [1087 kB] Fetched 5892 kB in 2s (3398 kB/s) Reading package lists... Warning: Permanently added '[localhost]:22947' (ED25519) to the list of known hosts. Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: javascript-common libexpat1-dev libjs-jquery libjs-sphinxdoc libjs-underscore libpython3-dev libpython3.10 libpython3.10-dev python3-dev python3-distutils python3-lib2to3 python3-setuptools python3-wheel python3.10-dev zlib1g-dev Suggested packages: apache2 | lighttpd | httpd python-setuptools-doc The following NEW packages will be installed: javascript-common libexpat1-dev libjs-jquery libjs-sphinxdoc libjs-underscore libpython3-dev libpython3.10 libpython3.10-dev python3-dev python3-distutils python3-lib2to3 python3-pip python3-setuptools python3-wheel python3.10-dev zlib1g-dev 0 upgraded, 16 newly installed, 0 to remove and 3 not upgraded. Need to get 10.0 MB of archives. After this operation, 40.5 MB of additional disk space will be used. Get:1 http://archive.ubuntu.com/ubuntu jammy/main amd64 javascript-common all 11+nmu1 [5936 B] Get:2 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libexpat1-dev amd64 2.4.7-1ubuntu0.3 [147 kB] Get:3 http://archive.ubuntu.com/ubuntu jammy/main amd64 libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [321 kB] Get:4 http://archive.ubuntu.com/ubuntu jammy/main amd64 libjs-underscore all 1.13.2~dfsg-2 [118 kB] Get:5 http://archive.ubuntu.com/ubuntu jammy/main amd64 libjs-sphinxdoc all 4.3.2-1 [139 kB] Get:6 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libpython3.10 amd64 3.10.12-1~22.04.3 [1948 kB] Get:7 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu9.2 [164 kB] Get:8 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libpython3.10-dev amd64 3.10.12-1~22.04.3 [4762 kB] Get:9 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libpython3-dev amd64 3.10.6-1~22.04 [7166 B] Get:10 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3.10-dev amd64 3.10.12-1~22.04.3 [507 kB] Get:11 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-lib2to3 all 3.10.8-1~22.04 [77.6 kB] Get:12 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-distutils all 3.10.8-1~22.04 [139 kB] Get:13 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-dev amd64 3.10.6-1~22.04 [26.0 kB] Get:14 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-setuptools all 59.6.0-1.2ubuntu0.22.04.1 [339 kB] Get:15 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 python3-wheel all 0.37.1-2ubuntu0.22.04.1 [32.0 kB] Get:16 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 python3-pip all 22.0.2+dfsg-1ubuntu0.4 [1305 kB] Fetched 10.0 MB in 0s (49.8 MB/s) Selecting previously unselected package javascript-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39171 files and directories currently installed.) Preparing to unpack .../00-javascript-common_11+nmu1_all.deb ... Unpacking javascript-common (11+nmu1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../01-libexpat1-dev_2.4.7-1ubuntu0.3_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.4.7-1ubuntu0.3) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../02-libjs-jquery_3.6.0+dfsg+~3.5.13-1_all.deb ... Unpacking libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../03-libjs-underscore_1.13.2~dfsg-2_all.deb ... Unpacking libjs-underscore (1.13.2~dfsg-2) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../04-libjs-sphinxdoc_4.3.2-1_all.deb ... Unpacking libjs-sphinxdoc (4.3.2-1) ... Selecting previously unselected package libpython3.10:amd64. Preparing to unpack .../05-libpython3.10_3.10.12-1~22.04.3_amd64.deb ... Unpacking libpython3.10:amd64 (3.10.12-1~22.04.3) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../06-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu9.2_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu9.2) ... Selecting previously unselected package libpython3.10-dev:amd64. Preparing to unpack .../07-libpython3.10-dev_3.10.12-1~22.04.3_amd64.deb ... Unpacking libpython3.10-dev:amd64 (3.10.12-1~22.04.3) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../08-libpython3-dev_3.10.6-1~22.04_amd64.deb ... Unpacking libpython3-dev:amd64 (3.10.6-1~22.04) ... Selecting previously unselected package python3.10-dev. Preparing to unpack .../09-python3.10-dev_3.10.12-1~22.04.3_amd64.deb ... Unpacking python3.10-dev (3.10.12-1~22.04.3) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../10-python3-lib2to3_3.10.8-1~22.04_all.deb ... Unpacking python3-lib2to3 (3.10.8-1~22.04) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../11-python3-distutils_3.10.8-1~22.04_all.deb ... Unpacking python3-distutils (3.10.8-1~22.04) ... Selecting previously unselected package python3-dev. Preparing to unpack .../12-python3-dev_3.10.6-1~22.04_amd64.deb ... Unpacking python3-dev (3.10.6-1~22.04) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../13-python3-setuptools_59.6.0-1.2ubuntu0.22.04.1_all.deb ... Unpacking python3-setuptools (59.6.0-1.2ubuntu0.22.04.1) ... Selecting previously unselected package python3-wheel. Preparing to unpack .../14-python3-wheel_0.37.1-2ubuntu0.22.04.1_all.deb ... Unpacking python3-wheel (0.37.1-2ubuntu0.22.04.1) ... Selecting previously unselected package python3-pip. Preparing to unpack .../15-python3-pip_22.0.2+dfsg-1ubuntu0.4_all.deb ... Unpacking python3-pip (22.0.2+dfsg-1ubuntu0.4) ... Setting up javascript-common (11+nmu1) ... Setting up libpython3.10:amd64 (3.10.12-1~22.04.3) ... Setting up libexpat1-dev:amd64 (2.4.7-1ubuntu0.3) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu9.2) ... Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Setting up python3-lib2to3 (3.10.8-1~22.04) ... Setting up libjs-underscore (1.13.2~dfsg-2) ... Setting up python3-distutils (3.10.8-1~22.04) ... Setting up python3-setuptools (59.6.0-1.2ubuntu0.22.04.1) ... Setting up python3-wheel (0.37.1-2ubuntu0.22.04.1) ... Setting up libpython3.10-dev:amd64 (3.10.12-1~22.04.3) ... Setting up python3-pip (22.0.2+dfsg-1ubuntu0.4) ... Setting up libjs-sphinxdoc (4.3.2-1) ... Setting up python3.10-dev (3.10.12-1~22.04.3) ... Setting up libpython3-dev:amd64 (3.10.6-1~22.04) ... Setting up python3-dev (3.10.6-1~22.04) ... Processing triggers for libc-bin (2.35-0ubuntu3.8) ... [#1258324] 2024/06/23 06:45:28 Cloning repositories Cloning into 'OrgMatt'... + cd OrgMatt + git checkout -q 0e77c7e9d98d7903f24898a4fc661b0e45c49596 + cd OrgMatt + git submodule update --init --recursive [#1258324] 2024/06/23 06:45:29 Running task path [#1258324] 2024/06/23 06:45:30 Running task check [#1258324] 2024/06/23 06:45:33 Running task setup [#1258324] 2024/06/23 06:45:47 Running task test [#1258324] 2024/06/23 06:46:00 Build failed. [#1258324] 2024/06/23 06:46:00 The build environment will be kept alive for 10 minutes. [#1258324] 2024/06/23 06:46:00 To log in with SSH and examine it, use the following command: [#1258324] 2024/06/23 06:46:00 [#1258324] 2024/06/23 06:46:00 ssh -t builds@fra01.builds.sr.ht connect 1258324 [#1258324] 2024/06/23 06:46:00 [#1258324] 2024/06/23 06:46:00 After logging in, the deadline is increased to your remaining build time. [#1258324] 2024/06/23 06:56:00 Deadline elapsed. Terminating build environment. [#1258324] 2024/06/23 06:56:00 Error: Running task on guest: exit status 1 |
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+ echo 'export PATH=$PATH:/home/build/.local/bin' |
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+ pip3 install reuse Defaulting to user installation because normal site-packages is not writeable Collecting reuse Downloading reuse-3.0.2.tar.gz (269 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 269.4/269.4 KB 21.8 MB/s eta 0:00:00 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting Jinja2<4.0.0,>=3.0.0 Downloading jinja2-3.1.4-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.3/133.3 KB 36.3 MB/s eta 0:00:00 Collecting binaryornot<0.5.0,>=0.4.4 Downloading binaryornot-0.4.4-py2.py3-none-any.whl (9.0 kB) Collecting python-debian!=0.1.45,!=0.1.46,!=0.1.47,<0.2.0,>=0.1.34 Downloading python_debian-0.1.49-py3-none-any.whl (132 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 132.5/132.5 KB 55.9 MB/s eta 0:00:00 Collecting license-expression>=1.0 Downloading license_expression-30.3.0-py3-none-any.whl (108 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 108.9/108.9 KB 68.9 MB/s eta 0:00:00 Collecting boolean.py>=3.8 Downloading boolean.py-4.0-py3-none-any.whl (25 kB) Collecting chardet>=3.0.2 Downloading chardet-5.2.0-py3-none-any.whl (199 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 199.4/199.4 KB 58.1 MB/s eta 0:00:00 Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.1.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Building wheels for collected packages: reuse Building wheel for reuse (pyproject.toml): started Building wheel for reuse (pyproject.toml): finished with status 'done' Created wheel for reuse: filename=reuse-3.0.2-cp310-cp310-manylinux_2_35_x86_64.whl size=119657 sha256=91bebc3608eeea55875ac12fb9650ffa9738b8be4e8025014818adfddbb884c5 Stored in directory: /home/build/.cache/pip/wheels/2b/57/24/d43da4d2afa2378313e911ca8254dd24b3becb9e0ee2d57e0b Successfully built reuse Installing collected packages: boolean.py, MarkupSafe, license-expression, chardet, python-debian, Jinja2, binaryornot, reuse Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 binaryornot-0.4.4 boolean.py-4.0 chardet-5.2.0 license-expression-30.3.0 python-debian-0.1.49 reuse-3.0.2 + cd OrgMatt + reuse lint # SUMMARY * Bad licenses: 0 * Deprecated licenses: 0 * Licenses without file extension: 0 * Missing licenses: 0 * Unused licenses: 0 * Used licenses: GPL-3.0-or-later, Python-2.0, CC-BY-4.0, BSD-2-Clause, CC0-1.0, CC-BY-SA-4.0 * Read errors: 0 * files with copyright information: 90 / 90 * files with license information: 90 / 90 Congratulations! Your project is compliant with version 3.0 of the REUSE Specification :-) |
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+ cd OrgMatt + pip3 install --upgrade pip pytest setuptools Defaulting to user installation because normal site-packages is not writeable Requirement already satisfied: pip in /usr/lib/python3/dist-packages (22.0.2) Collecting pip Downloading pip-24.1-py3-none-any.whl (1.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 63.5 MB/s eta 0:00:00 Collecting pytest Downloading pytest-8.2.2-py3-none-any.whl (339 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 339.9/339.9 KB 106.5 MB/s eta 0:00:00 Requirement already satisfied: setuptools in /usr/lib/python3/dist-packages (59.6.0) Collecting setuptools Downloading setuptools-70.1.0-py3-none-any.whl (882 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 882.6/882.6 KB 124.2 MB/s eta 0:00:00 Collecting packaging Downloading packaging-24.1-py3-none-any.whl (53 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.0/54.0 KB 32.4 MB/s eta 0:00:00 Collecting tomli>=1 Downloading tomli-2.0.1-py3-none-any.whl (12 kB) Collecting iniconfig Downloading iniconfig-2.0.0-py3-none-any.whl (5.9 kB) Collecting exceptiongroup>=1.0.0rc8 Downloading exceptiongroup-1.2.1-py3-none-any.whl (16 kB) Collecting pluggy<2.0,>=1.5 Downloading pluggy-1.5.0-py3-none-any.whl (20 kB) Installing collected packages: tomli, setuptools, pluggy, pip, packaging, iniconfig, exceptiongroup, pytest Successfully installed exceptiongroup-1.2.1 iniconfig-2.0.0 packaging-24.1 pip-24.1 pluggy-1.5.0 pytest-8.2.2 setuptools-70.1.0 tomli-2.0.1 + pip install -r requirements.txt Defaulting to user installation because normal site-packages is not writeable Collecting numpy>=1.20 (from -r requirements.txt (line 5)) Downloading numpy-2.0.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.9/60.9 kB 16.1 MB/s eta 0:00:00 Collecting scipy (from -r requirements.txt (line 6)) Downloading scipy-1.13.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.6/60.6 kB 28.0 MB/s eta 0:00:00 Collecting pandas (from -r requirements.txt (line 7)) Downloading pandas-2.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) Collecting pint>=0.19 (from -r requirements.txt (line 8)) Downloading Pint-0.24-py3-none-any.whl.metadata (8.5 kB) Collecting pycountry (from -r requirements.txt (line 9)) Downloading pycountry-24.6.1-py3-none-any.whl.metadata (12 kB) Collecting openscm-units (from -r requirements.txt (line 10)) Downloading openscm_units-0.6.0-py3-none-any.whl.metadata (3.9 kB) Collecting seaborn (from -r requirements.txt (line 11)) Downloading seaborn-0.13.2-py3-none-any.whl.metadata (5.4 kB) Collecting python-dateutil>=2.8.2 (from pandas->-r requirements.txt (line 7)) Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Collecting pytz>=2020.1 (from pandas->-r requirements.txt (line 7)) Downloading pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) Collecting tzdata>=2022.7 (from pandas->-r requirements.txt (line 7)) Downloading tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) Collecting appdirs>=1.4.4 (from pint>=0.19->-r requirements.txt (line 8)) Downloading appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) Collecting typing-extensions (from pint>=0.19->-r requirements.txt (line 8)) Downloading typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) Collecting flexcache>=0.3 (from pint>=0.19->-r requirements.txt (line 8)) Downloading flexcache-0.3-py3-none-any.whl.metadata (7.0 kB) Collecting flexparser>=0.3 (from pint>=0.19->-r requirements.txt (line 8)) Downloading flexparser-0.3.1-py3-none-any.whl.metadata (18 kB) Collecting globalwarmingpotentials (from openscm-units->-r requirements.txt (line 10)) Downloading globalwarmingpotentials-0.11.1-py2.py3-none-any.whl.metadata (4.6 kB) Collecting matplotlib!=3.6.1,>=3.4 (from seaborn->-r requirements.txt (line 11)) Downloading matplotlib-3.9.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (11 kB) Collecting contourpy>=1.0.1 (from matplotlib!=3.6.1,>=3.4->seaborn->-r requirements.txt (line 11)) Downloading contourpy-1.2.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.8 kB) Collecting cycler>=0.10 (from matplotlib!=3.6.1,>=3.4->seaborn->-r requirements.txt (line 11)) Downloading cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) Collecting fonttools>=4.22.0 (from matplotlib!=3.6.1,>=3.4->seaborn->-r requirements.txt (line 11)) Downloading fonttools-4.53.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (162 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 162.2/162.2 kB 35.3 MB/s eta 0:00:00 Collecting kiwisolver>=1.3.1 (from matplotlib!=3.6.1,>=3.4->seaborn->-r requirements.txt (line 11)) Downloading kiwisolver-1.4.5-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata (6.4 kB) Requirement already satisfied: packaging>=20.0 in 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pytz-2024.1 scipy-1.13.1 seaborn-0.13.2 six-1.16.0 typing-extensions-4.12.2 tzdata-2024.1 + pip install coverage Defaulting to user installation because normal site-packages is not writeable Collecting coverage Downloading coverage-7.5.4-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.2 kB) Downloading coverage-7.5.4-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (233 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 233.1/233.1 kB 42.5 MB/s eta 0:00:00 Installing collected packages: coverage Successfully installed coverage-7.5.4 + pip install . Defaulting to user installation because normal site-packages is not writeable Processing /home/build/OrgMatt Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: numpy>=1.20 in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.4.3) (2.0.0) Requirement already satisfied: scipy in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.4.3) (1.13.1) Requirement already satisfied: pandas in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.4.3) (2.2.2) Requirement already satisfied: pint>=0.19 in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.4.3) (0.24) Requirement already satisfied: pycountry in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.4.3) (24.6.1) Requirement already satisfied: openscm-units in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.4.3) (0.6.0) Requirement already satisfied: seaborn in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.4.3) (0.13.2) Requirement already satisfied: appdirs>=1.4.4 in /home/build/.local/lib/python3.10/site-packages (from pint>=0.19->OrgMatt==0.4.3) (1.4.4) Requirement already satisfied: typing-extensions in /home/build/.local/lib/python3.10/site-packages (from pint>=0.19->OrgMatt==0.4.3) (4.12.2) Requirement already satisfied: flexcache>=0.3 in /home/build/.local/lib/python3.10/site-packages (from pint>=0.19->OrgMatt==0.4.3) (0.3) Requirement already satisfied: flexparser>=0.3 in /home/build/.local/lib/python3.10/site-packages (from pint>=0.19->OrgMatt==0.4.3) (0.3.1) Requirement already satisfied: globalwarmingpotentials in /home/build/.local/lib/python3.10/site-packages (from openscm-units->OrgMatt==0.4.3) (0.11.1) Requirement already satisfied: python-dateutil>=2.8.2 in /home/build/.local/lib/python3.10/site-packages (from pandas->OrgMatt==0.4.3) (2.9.0.post0) Requirement already satisfied: pytz>=2020.1 in /home/build/.local/lib/python3.10/site-packages (from pandas->OrgMatt==0.4.3) (2024.1) Requirement already satisfied: tzdata>=2022.7 in /home/build/.local/lib/python3.10/site-packages (from pandas->OrgMatt==0.4.3) (2024.1) Requirement already satisfied: matplotlib!=3.6.1,>=3.4 in /home/build/.local/lib/python3.10/site-packages (from seaborn->OrgMatt==0.4.3) (3.9.0) Requirement already satisfied: contourpy>=1.0.1 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.4.3) (1.2.1) Requirement already satisfied: cycler>=0.10 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.4.3) (0.12.1) Requirement already satisfied: fonttools>=4.22.0 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.4.3) (4.53.0) Requirement already satisfied: kiwisolver>=1.3.1 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.4.3) (1.4.5) Requirement already satisfied: packaging>=20.0 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.4.3) (24.1) Requirement already satisfied: pillow>=8 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.4.3) (10.3.0) Requirement already satisfied: pyparsing>=2.3.1 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.4.3) (3.1.2) Requirement already satisfied: six>=1.5 in /home/build/.local/lib/python3.10/site-packages (from python-dateutil>=2.8.2->pandas->OrgMatt==0.4.3) (1.16.0) Building wheels for collected packages: OrgMatt Building wheel for OrgMatt (pyproject.toml): started Building wheel for OrgMatt (pyproject.toml): finished with status 'done' Created wheel for OrgMatt: filename=OrgMatt-0.4.3-py3-none-any.whl size=111595 sha256=3e102d061c267ebd5d073c999cfad62784462320323895feb8c95784e816dfaa Stored in directory: /tmp/pip-ephem-wheel-cache-k1om5gat/wheels/fa/c8/54/6668a436f152ec271fbc43c4d4817e40063b0c2195101cffa1 Successfully built OrgMatt Installing collected packages: OrgMatt Successfully installed OrgMatt-0.4.3 |
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+ cd OrgMatt + coverage run -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.10.12, pytest-8.2.2, pluggy-1.5.0 rootdir: /home/build/OrgMatt configfile: pyproject.toml collected 37 items tests/test_data.py ........... [ 29%] tests/test_excreta.py .. [ 35%] tests/test_food.py ... [ 43%] tests/test_impacts.py .. [ 48%] tests/test_metabolism.py ...F... [ 67%] tests/test_nutrients.py ... [ 75%] tests/test_plots.py . [ 78%] tests/test_units.py .... [ 89%] tests/test_utils.py .... [100%] =================================== FAILURES =================================== ____________________________ test_unavailable_data _____________________________ def test_unavailable_data(): ''' Check corrections when data is unavailable ''' kwargs = {"sex": "female", "diet": "vegan", "country": "DEU"} m = MetabolicDataModel(age_group="senior", **kwargs) # for intake assert np.isnan(nutrient_intake(1, 1*day, "N", group="senior", **kwargs).m) res_func = nutrient_intake( 1, 1*day, "N", group="senior", auto_correct=True, **kwargs) res_model = m.nutrient_intake(1*day, "N") assert m.last_correction_status >= 1 assert res_func != res_model # for excreta kwargs = {"sex": "male", "country": "SWE"} age_range = "31-38" m = MetabolicDataModel(age_group=age_range, **kwargs) assert m.age == age_range assert np.isnan( nutrient_from_population( 1, 1*day, "N", age=age_range, excreta="urine", **kwargs).m) skipped = [] res_func = nutrient_from_population( 1, 1*day, "N", age=age_range, excreta="urine", auto_correct=True, skipped_constraints=skipped, **kwargs) assert "sex" in skipped, "This test should check correction for `sex`." res_model = m.nutrient_excretion(1*day, "N", excreta="urine") assert res_func != res_model # check that corrections are consistent diet = "vegan" kwargs = {"sex": "female", "diet": diet, "country": "DEU"} res_intake = {} res_excreta = {} res_urine = {} for g in ("kid", "adult"): assert np.isnan(nutrient_intake(1, 1*day, "N", group=g, **kwargs).m) m = MetabolicDataModel(age_group=g, **kwargs) assert m.diet == diet res_intake[g] = m.nutrient_intake(1*day, "N") res_excreta[g] = m.nutrient_excretion(1*day, "N", excreta="all") res_urine[g] = m.nutrient_excretion(1*day, "N", excreta="urine") # NB: data-based model is not fully consistent, urine excretion may be # higher than intake assert res_intake["kid"] < res_intake["adult"] > assert res_urine["kid"] < res_urine["adult"] E AssertionError: assert <Quantity(9.22299446, 'gN')> < <Quantity(9.21149924, 'gN')> tests/test_metabolism.py:174: AssertionError ----------------------------- Captured stderr call ----------------------------- [INFO @ orgmatt._utils.tools]: from coverage (L8) - Removed {'diet', 'country'} from `kwargs` in function `nutrient_intake`. Final arguments used were: {'region': 'Europe', 'group': 'senior', 'sex': 'female'}. [INFO @ orgmatt._utils.tools]: from coverage (L8) - Removed {'diet', 'country'} from `kwargs` in function `nutrient_intake`. Final arguments used were: {'region': 'Europe', 'group': 'senior', 'sex': 'female'}. [INFO @ orgmatt._utils.tools]: from coverage (L8) - Removed {'age', 'sex'} from `kwargs` in function `nutrient_from_population`. Final arguments used were: {'region': 'Europe', 'group': 'adult', 'country': 'SWE'}. [INFO @ orgmatt._utils.tools]: from coverage (L8) - Removed {'sex'} from `kwargs` in function `nutrient_from_population`. Final arguments used were: {'region': 'Europe', 'group': 'adult', 'country': 'SWE'}. [INFO @ orgmatt._utils.tools]: from coverage (L8) - Removed {'diet', 'country'} from `kwargs` in function `nutrient_intake`. Final arguments used were: {'region': 'Europe', 'group': 'kid', 'sex': 'female'}. [INFO @ orgmatt._utils.tools]: from coverage (L8) - Removed {'group'} from `kwargs` in function `fraction_nutrient_excreta`. Final arguments used were: {'region': 'Europe', 'country': 'DEU', 'sex': 'female', 'diet': 'vegan'}. [INFO @ orgmatt._utils.tools]: from coverage (L8) - Removed {'diet', 'country'} from `kwargs` in function `nutrient_intake`. Final arguments used were: {'region': 'Europe', 'group': 'kid', 'sex': 'female'}. [INFO @ orgmatt._utils.tools]: from coverage (L8) - Removed {'group', 'diet', 'country'} from `kwargs` in function `nutrient_from_population`. Final arguments used were: {'region': 'Europe', 'sex': 'female'}. [INFO @ orgmatt._utils.tools]: from coverage (L8) - Removed {'country'} from `kwargs` in function `nutrient_intake`. Final arguments used were: {'region': 'Europe', 'group': 'adult', 'sex': 'female', 'diet': 'vegan'}. [INFO @ orgmatt._utils.tools]: from coverage (L8) - Removed {'country'} from `kwargs` in function `nutrient_intake`. Final arguments used were: {'region': 'Europe', 'group': 'adult', 'sex': 'female', 'diet': 'vegan'}. [INFO @ orgmatt._utils.tools]: from coverage (L8) - Removed {'diet', 'country'} from `kwargs` in function `nutrient_from_population`. Final arguments used were: {'region': 'Europe', 'group': 'adult', 'sex': 'female'}. ------------------------------ Captured log call ------------------------------- INFO orgmatt._utils.tools:logger.py:41 from coverage (L8) - Removed {'diet', 'country'} from `kwargs` in function `nutrient_intake`. Final arguments used were: {'region': 'Europe', 'group': 'senior', 'sex': 'female'}. INFO orgmatt._utils.tools:logger.py:41 from coverage (L8) - Removed {'diet', 'country'} from `kwargs` in function `nutrient_intake`. Final arguments used were: {'region': 'Europe', 'group': 'senior', 'sex': 'female'}. INFO orgmatt._utils.tools:logger.py:41 from coverage (L8) - Removed {'age', 'sex'} from `kwargs` in function `nutrient_from_population`. Final arguments used were: {'region': 'Europe', 'group': 'adult', 'country': 'SWE'}. INFO orgmatt._utils.tools:logger.py:41 from coverage (L8) - Removed {'sex'} from `kwargs` in function `nutrient_from_population`. Final arguments used were: {'region': 'Europe', 'group': 'adult', 'country': 'SWE'}. INFO orgmatt._utils.tools:logger.py:41 from coverage (L8) - Removed {'diet', 'country'} from `kwargs` in function `nutrient_intake`. Final arguments used were: {'region': 'Europe', 'group': 'kid', 'sex': 'female'}. INFO orgmatt._utils.tools:logger.py:41 from coverage (L8) - Removed {'group'} from `kwargs` in function `fraction_nutrient_excreta`. Final arguments used were: {'region': 'Europe', 'country': 'DEU', 'sex': 'female', 'diet': 'vegan'}. INFO orgmatt._utils.tools:logger.py:41 from coverage (L8) - Removed {'diet', 'country'} from `kwargs` in function `nutrient_intake`. Final arguments used were: {'region': 'Europe', 'group': 'kid', 'sex': 'female'}. INFO orgmatt._utils.tools:logger.py:41 from coverage (L8) - Removed {'group', 'diet', 'country'} from `kwargs` in function `nutrient_from_population`. Final arguments used were: {'region': 'Europe', 'sex': 'female'}. WARNING root:logger.py:39 from coverage (L8) - Could not autocorrect missing field: 'diet=vegan'. INFO orgmatt._utils.tools:logger.py:41 from coverage (L8) - Removed {'country'} from `kwargs` in function `nutrient_intake`. Final arguments used were: {'region': 'Europe', 'group': 'adult', 'sex': 'female', 'diet': 'vegan'}. INFO orgmatt._utils.tools:logger.py:41 from coverage (L8) - Removed {'country'} from `kwargs` in function `nutrient_intake`. Final arguments used were: {'region': 'Europe', 'group': 'adult', 'sex': 'female', 'diet': 'vegan'}. INFO orgmatt._utils.tools:logger.py:41 from coverage (L8) - Removed {'diet', 'country'} from `kwargs` in function `nutrient_from_population`. Final arguments used were: {'region': 'Europe', 'group': 'adult', 'sex': 'female'}. WARNING root:logger.py:39 from coverage (L8) - Could not autocorrect missing field: 'diet=vegan'. =========================== short test summary info ============================ FAILED tests/test_metabolism.py::test_unavailable_data - AssertionError: asse... ======================== 1 failed, 36 passed in 12.35s ========================= |