arch: null
artifacts: []
environment:
  BUILD_SUBMITTER: git.sr.ht
  GIT_REF: refs/heads/numpy2
image: ubuntu/lts
packages:
- python3-pip
- python3-venv
repositories: {}
secrets:
- ceb490c3-68b4-41f7-9aa9-eb2e4b91d424
- 0b249c79-8eaf-4b82-b1d1-f3c38c7eae4b
- 3a7c042a-24d8-4f53-b75c-f061f7517b65
shell: false
sources:
- https://git.sr.ht/~tfardet/NNGT#15e0e8a282cc7c930dd8b0748a8fe09f09db919b
tasks:
- mkvenv: |
    cd /home/build
    python3 -m venv .nngt_env
    source /home/build/.nngt_env/bin/activate
    echo 'source /home/build/.nngt_env/bin/activate' >> /home/build/.buildenv
- check: |
    export PATH="/home/build/.local/bin:$PATH"
    cd NNGT
    python3 extra/check_headers.py
    pip3 install reuse
    reuse lint
- setup: |
    sudo apt install -y software-properties-common
    sudo sh -c 'echo -n "deb https://downloads.skewed.de/apt jammy main\n" >> /etc/apt/sources.list'
    sudo apt-key adv --keyserver keys.openpgp.org --recv-key 612DEFB798507F25
    sudo add-apt-repository -y ppa:nest-simulator/nest
    sudo apt-get update -qq
    sudo apt install -y gcc python3-dev libgeos-dev proj-bin libproj-dev openmpi-bin libopenmpi-dev libgmp-dev nest
    sudo apt install -y python3-pip python3-tk libigraph-dev python3-cairo python3-cairocffi
    # sudo apt install -y python3-graph-tool  # skipping graph-tool until it gets fixed
    pip install --upgrade "numpy<2" scipy "cython<3.0.9" mpi4py
    pip install --upgrade "networkx>=2.4" python-igraph
    pip install --upgrade "matplotlib>=3.6" seaborn shapely svg.path dxfgrabber cartopy geopandas descartes lxml
    pip install --upgrade pytest pytest-mpi cov-core coverage coveralls[yaml]
    mv .coveralls.yml NNGT/.coveralls.yml || true
    cd NNGT
    pip install .
    echo 'export PATH=/home/build/.local/bin:$PATH' >> /home/build/.buildenv
    python3 setup.py build
- test: |
    cd NNGT
    GL=all coverage run -p -m pytest testing/library_compatibility.py --backends="networkx,igraph"
    # GL=gt coverage run -p -m pytest testing  # skipping graph-tool until it gets fixed
    GL=nx coverage run -p -m pytest testing
    GL=ig coverage run -p -m pytest testing
    GL=nngt coverage run -p -m pytest testing
    GL=ig OMP=2 PYNEST_QUIET=1 coverage run -p -m pytest testing
    GL=nx OMP=0 MPI=1 mpirun -n 2 coverage run -p -m pytest --with-mpi testing
    coverage combine
    GIT_BRANCH=$(git show -s --pretty=%D HEAD | tr -s ', /' '\n' | grep -v HEAD | sed -n 2p)
    CI_NAME=$BUILD_SUBMITTER CI_BUILD_NUMBER=$JOB_ID CI_BUILD_URL=$JOB_URL CI_BRANCH=$GIT_BRANCH coveralls || true
- doc: |
    cd NNGT
    GIT_BRANCH=$(git show -s --pretty=%D HEAD | tr -s ', /' '\n' | grep -v HEAD | sed -n 2p)
    set +x
    . ~/.rtd_nngt
    if [ "$GIT_BRANCH" == "main" ]; then curl -X POST -d "branches=main" -d "token=$rtd_nngt_token" https://readthedocs.org/api/v2/webhook/nngt/214030/; fi
    set -x
triggers: []
oauth: ""