Single line description + ignore build exceptions
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[#1205551] 2024/04/26 15:44:51 Booting image ubuntu/lts (default) on port 22875 [#1205551] 2024/04/26 15:44:52 Waiting for guest to settle [#1205551] 2024/04/26 15:45:00 Sending tasks [#1205551] 2024/04/26 15:45:02 Sending build environment [#1205551] 2024/04/26 15:45:02 Sending secrets [#1205551] 2024/04/26 15:45:02 Resolving secret ceb490c3-68b4-41f7-9aa9-eb2e4b91d424 [#1205551] 2024/04/26 15:45:03 Resolving secret 0b249c79-8eaf-4b82-b1d1-f3c38c7eae4b [#1205551] 2024/04/26 15:45:04 Resolving secret 3a7c042a-24d8-4f53-b75c-f061f7517b65 [#1205551] 2024/04/26 15:45:04 Installing packages Warning: Permanently added '[localhost]:22875' (ED25519) to the list of known hosts. Hit:1 http://archive.ubuntu.com/ubuntu jammy InRelease Get:2 http://archive.ubuntu.com/ubuntu jammy-security InRelease [110 kB] Get:3 http://archive.ubuntu.com/ubuntu jammy-updates InRelease [119 kB] Get:4 http://archive.ubuntu.com/ubuntu jammy-backports InRelease [109 kB] Get:5 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 Packages [1394 kB] Get:6 http://archive.ubuntu.com/ubuntu jammy-security/main Translation-en [243 kB] Get:7 http://archive.ubuntu.com/ubuntu jammy-security/restricted amd64 Packages [1773 kB] Get:8 http://archive.ubuntu.com/ubuntu jammy-security/restricted Translation-en [300 kB] Get:9 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 Packages [848 kB] Get:10 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 Packages [1610 kB] Get:11 http://archive.ubuntu.com/ubuntu jammy-updates/universe amd64 Packages [1071 kB] Get:12 http://archive.ubuntu.com/ubuntu jammy-updates/universe Translation-en [244 kB] Get:13 http://archive.ubuntu.com/ubuntu jammy-backports/main amd64 Packages [67.1 kB] Get:14 http://archive.ubuntu.com/ubuntu jammy-backports/universe amd64 Packages [27.2 kB] Fetched 7916 kB in 2s (4255 kB/s) Reading package lists... Warning: Permanently added '[localhost]:22875' (ED25519) to the list of known hosts. Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: javascript-common libexpat1-dev libjs-jquery libjs-sphinxdoc libjs-underscore libpython3-dev libpython3.10 libpython3.10-dev python3-dev python3-distutils python3-lib2to3 python3-setuptools python3-wheel python3.10-dev zlib1g-dev Suggested packages: apache2 | lighttpd | httpd python-setuptools-doc The following NEW packages will be installed: javascript-common libexpat1-dev libjs-jquery libjs-sphinxdoc libjs-underscore libpython3-dev libpython3.10 libpython3.10-dev python3-dev python3-distutils python3-lib2to3 python3-pip python3-setuptools python3-wheel python3.10-dev zlib1g-dev 0 upgraded, 16 newly installed, 0 to remove and 4 not upgraded. Need to get 10.0 MB of archives. After this operation, 40.5 MB of additional disk space will be used. Get:1 http://archive.ubuntu.com/ubuntu jammy/main amd64 javascript-common all 11+nmu1 [5936 B] Get:2 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libexpat1-dev amd64 2.4.7-1ubuntu0.3 [147 kB] Get:3 http://archive.ubuntu.com/ubuntu jammy/main amd64 libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [321 kB] Get:4 http://archive.ubuntu.com/ubuntu jammy/main amd64 libjs-underscore all 1.13.2~dfsg-2 [118 kB] Get:5 http://archive.ubuntu.com/ubuntu jammy/main amd64 libjs-sphinxdoc all 4.3.2-1 [139 kB] Get:6 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libpython3.10 amd64 3.10.12-1~22.04.3 [1948 kB] Get:7 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu9.2 [164 kB] Get:8 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libpython3.10-dev amd64 3.10.12-1~22.04.3 [4762 kB] Get:9 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libpython3-dev amd64 3.10.6-1~22.04 [7166 B] Get:10 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3.10-dev amd64 3.10.12-1~22.04.3 [507 kB] Get:11 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-lib2to3 all 3.10.8-1~22.04 [77.6 kB] Get:12 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-distutils all 3.10.8-1~22.04 [139 kB] Get:13 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-dev amd64 3.10.6-1~22.04 [26.0 kB] Get:14 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-setuptools all 59.6.0-1.2ubuntu0.22.04.1 [339 kB] Get:15 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 python3-wheel all 0.37.1-2ubuntu0.22.04.1 [32.0 kB] Get:16 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 python3-pip all 22.0.2+dfsg-1ubuntu0.4 [1305 kB] Fetched 10.0 MB in 1s (7873 kB/s) Selecting previously unselected package javascript-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39100 files and directories currently installed.) Preparing to unpack .../00-javascript-common_11+nmu1_all.deb ... Unpacking javascript-common (11+nmu1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../01-libexpat1-dev_2.4.7-1ubuntu0.3_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.4.7-1ubuntu0.3) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../02-libjs-jquery_3.6.0+dfsg+~3.5.13-1_all.deb ... Unpacking libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../03-libjs-underscore_1.13.2~dfsg-2_all.deb ... Unpacking libjs-underscore (1.13.2~dfsg-2) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../04-libjs-sphinxdoc_4.3.2-1_all.deb ... Unpacking libjs-sphinxdoc (4.3.2-1) ... Selecting previously unselected package libpython3.10:amd64. Preparing to unpack .../05-libpython3.10_3.10.12-1~22.04.3_amd64.deb ... Unpacking libpython3.10:amd64 (3.10.12-1~22.04.3) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../06-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu9.2_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu9.2) ... Selecting previously unselected package libpython3.10-dev:amd64. Preparing to unpack .../07-libpython3.10-dev_3.10.12-1~22.04.3_amd64.deb ... Unpacking libpython3.10-dev:amd64 (3.10.12-1~22.04.3) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../08-libpython3-dev_3.10.6-1~22.04_amd64.deb ... Unpacking libpython3-dev:amd64 (3.10.6-1~22.04) ... Selecting previously unselected package python3.10-dev. Preparing to unpack .../09-python3.10-dev_3.10.12-1~22.04.3_amd64.deb ... Unpacking python3.10-dev (3.10.12-1~22.04.3) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../10-python3-lib2to3_3.10.8-1~22.04_all.deb ... Unpacking python3-lib2to3 (3.10.8-1~22.04) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../11-python3-distutils_3.10.8-1~22.04_all.deb ... Unpacking python3-distutils (3.10.8-1~22.04) ... Selecting previously unselected package python3-dev. Preparing to unpack .../12-python3-dev_3.10.6-1~22.04_amd64.deb ... Unpacking python3-dev (3.10.6-1~22.04) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../13-python3-setuptools_59.6.0-1.2ubuntu0.22.04.1_all.deb ... Unpacking python3-setuptools (59.6.0-1.2ubuntu0.22.04.1) ... Selecting previously unselected package python3-wheel. Preparing to unpack .../14-python3-wheel_0.37.1-2ubuntu0.22.04.1_all.deb ... Unpacking python3-wheel (0.37.1-2ubuntu0.22.04.1) ... Selecting previously unselected package python3-pip. Preparing to unpack .../15-python3-pip_22.0.2+dfsg-1ubuntu0.4_all.deb ... Unpacking python3-pip (22.0.2+dfsg-1ubuntu0.4) ... Setting up javascript-common (11+nmu1) ... Setting up libpython3.10:amd64 (3.10.12-1~22.04.3) ... Setting up libexpat1-dev:amd64 (2.4.7-1ubuntu0.3) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu9.2) ... Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Setting up python3-lib2to3 (3.10.8-1~22.04) ... Setting up libjs-underscore (1.13.2~dfsg-2) ... Setting up python3-distutils (3.10.8-1~22.04) ... Setting up python3-setuptools (59.6.0-1.2ubuntu0.22.04.1) ... Setting up python3-wheel (0.37.1-2ubuntu0.22.04.1) ... Setting up libpython3.10-dev:amd64 (3.10.12-1~22.04.3) ... Setting up python3-pip (22.0.2+dfsg-1ubuntu0.4) ... Setting up libjs-sphinxdoc (4.3.2-1) ... Setting up python3.10-dev (3.10.12-1~22.04.3) ... Setting up libpython3-dev:amd64 (3.10.6-1~22.04) ... Setting up python3-dev (3.10.6-1~22.04) ... Processing triggers for libc-bin (2.35-0ubuntu3.7) ... [#1205551] 2024/04/26 15:45:11 Cloning repositories Cloning into 'NNGT'... + cd NNGT + git checkout -q 226659228cc3e68ef39e38bd975f6fa9a45565d6 + cd NNGT + git submodule update --init --recursive Submodule 'nngt/geometry' (https://github.com/SENeC-Initiative/PyNCulture.git) registered for path 'nngt/geometry' Submodule 'nngt/plot/chord_diag' (https://codeberg.org/tfardet/mpl_chord_diagram.git) registered for path 'nngt/plot/chord_diag' Cloning into '/home/build/NNGT/nngt/geometry'... Cloning into '/home/build/NNGT/nngt/plot/chord_diag'... Submodule path 'nngt/geometry': checked out '98364e970315705ba32265e7d7bae90105b868c3' Submodule path 'nngt/plot/chord_diag': checked out '418e3ab73dad2f326e76d2bc13c7be9eb6a247b9' [#1205551] 2024/04/26 15:45:13 Running task check [#1205551] 2024/04/26 15:45:16 Running task setup [#1205551] 2024/04/26 15:47:04 Running task test [#1205551] 2024/04/26 15:54:36 Running task doc |
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+ export PATH=/home/build/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+ PATH=/home/build/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+ cd NNGT
+ python3 extra/check_headers.py
+ pip3 install reuse
Defaulting to user installation because normal site-packages is not writeable
Collecting reuse
Downloading reuse-3.0.2.tar.gz (269 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 269.4/269.4 KB 23.3 MB/s eta 0:00:00
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Collecting Jinja2<4.0.0,>=3.0.0
Downloading Jinja2-3.1.3-py3-none-any.whl (133 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.2/133.2 KB 80.3 MB/s eta 0:00:00
Collecting boolean.py>=3.8
Downloading boolean.py-4.0-py3-none-any.whl (25 kB)
Collecting python-debian!=0.1.45,!=0.1.46,!=0.1.47,<0.2.0,>=0.1.34
Downloading python_debian-0.1.49-py3-none-any.whl (132 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 132.5/132.5 KB 49.5 MB/s eta 0:00:00
Collecting license-expression>=1.0
Downloading license_expression-30.3.0-py3-none-any.whl (108 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 108.9/108.9 KB 72.5 MB/s eta 0:00:00
Collecting binaryornot<0.5.0,>=0.4.4
Downloading binaryornot-0.4.4-py2.py3-none-any.whl (9.0 kB)
Collecting chardet>=3.0.2
Downloading chardet-5.2.0-py3-none-any.whl (199 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 199.4/199.4 KB 99.2 MB/s eta 0:00:00
Collecting MarkupSafe>=2.0
Downloading MarkupSafe-2.1.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
Building wheels for collected packages: reuse
Building wheel for reuse (pyproject.toml): started
Building wheel for reuse (pyproject.toml): finished with status 'done'
Created wheel for reuse: filename=reuse-3.0.2-cp310-cp310-manylinux_2_35_x86_64.whl size=119657 sha256=91bebc3608eeea55875ac12fb9650ffa9738b8be4e8025014818adfddbb884c5
Stored in directory: /home/build/.cache/pip/wheels/2b/57/24/d43da4d2afa2378313e911ca8254dd24b3becb9e0ee2d57e0b
Successfully built reuse
Installing collected packages: boolean.py, MarkupSafe, license-expression, chardet, python-debian, Jinja2, binaryornot, reuse
Successfully installed Jinja2-3.1.3 MarkupSafe-2.1.5 binaryornot-0.4.4 boolean.py-4.0 chardet-5.2.0 license-expression-30.3.0 python-debian-0.1.49 reuse-3.0.2
+ reuse lint
# SUMMARY
* Bad licenses: 0
* Deprecated licenses: 0
* Licenses without file extension: 0
* Missing licenses: 0
* Unused licenses: 0
* Used licenses: Python-2.0, CC0-1.0, CC-BY-SA-4.0, BSD-2-Clause, GPL-3.0-or-later
* Read errors: 0
* files with copyright information: 183 / 183
* files with license information: 183 / 183
Congratulations! Your project is compliant with version 3.0 of the REUSE Specification :-)
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Get:138 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libopenblas-dev amd64 0.3.20+ds-1 [18.6 kB] Get:139 http://archive.ubuntu.com/ubuntu jammy/main amd64 libnuma-dev amd64 2.0.14-3ubuntu2 [35.9 kB] Get:140 http://archive.ubuntu.com/ubuntu jammy-updates/universe amd64 libhwloc-dev amd64 2.7.0-2ubuntu1 [256 kB] Get:141 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libpmix-dev amd64 4.1.2-2ubuntu1 [805 kB] Get:142 http://archive.ubuntu.com/ubuntu jammy/universe amd64 proj-data all 8.2.1-1 [10.0 MB] Get:143 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libproj22 amd64 8.2.1-1 [1257 kB] Get:144 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libqhull-r8.0 amd64 2020.2-4 [196 kB] Get:145 http://archive.ubuntu.com/ubuntu jammy/main amd64 libraqm0 amd64 0.7.0-4ubuntu1 [11.7 kB] Get:146 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libsqlite3-dev amd64 3.37.2-2ubuntu0.3 [846 kB] Get:147 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libtbbmalloc2 amd64 2021.5.0-7ubuntu2 [49.6 kB] Get:148 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libtbb12 amd64 2021.5.0-7ubuntu2 [84.8 kB] Get:149 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libjbig-dev amd64 2.1-3.1ubuntu0.22.04.1 [27.4 kB] Get:150 http://archive.ubuntu.com/ubuntu jammy/main amd64 liblzma-dev amd64 5.2.5-2ubuntu1 [159 kB] Get:151 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libtiffxx5 amd64 4.3.0-6ubuntu0.8 [5736 B] Get:152 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libtiff-dev amd64 4.3.0-6ubuntu0.8 [316 kB] Get:153 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libtinfo-dev amd64 6.3-2ubuntu0.1 [780 B] Get:154 http://archive.ubuntu.com/ubuntu jammy/main amd64 libtool all 2.4.6-15build2 [164 kB] Get:155 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libwebpdemux2 amd64 1.2.2-2ubuntu0.22.04.2 [9964 B] Get:156 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libwebpmux3 amd64 1.2.2-2ubuntu0.22.04.2 [20.5 kB] Get:157 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libxml2-dev amd64 2.9.13+dfsg-1ubuntu0.4 [804 kB] Get:158 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libxsimd-dev amd64 7.6.0-2 [108 kB] Get:159 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libxslt1.1 amd64 1.1.34-4ubuntu0.22.04.1 [164 kB] Get:160 http://archive.ubuntu.com/ubuntu jammy/universe amd64 llvm-11-runtime amd64 1:11.1.0-6 [186 kB] Get:161 http://archive.ubuntu.com/ubuntu jammy/universe amd64 llvm-11-linker-tools amd64 1:11.1.0-6 [1275 kB] Get:162 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libpfm4 amd64 4.11.1+git32-gd0b85fb-1ubuntu0.1 [345 kB] Get:163 http://archive.ubuntu.com/ubuntu jammy/universe amd64 llvm-11 amd64 1:11.1.0-6 [9118 kB] Get:164 http://archive.ubuntu.com/ubuntu jammy/main amd64 libffi-dev amd64 3.4.2-4 [63.7 kB] Get:165 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-pygments all 2.11.2+dfsg-2 [750 kB] Get:166 http://archive.ubuntu.com/ubuntu jammy/universe amd64 llvm-11-tools amd64 1:11.1.0-6 [359 kB] Get:167 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libz3-4 amd64 4.8.12-1 [5766 kB] Get:168 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libz3-dev amd64 4.8.12-1 [72.2 kB] Get:169 http://archive.ubuntu.com/ubuntu jammy/universe amd64 llvm-11-dev amd64 1:11.1.0-6 [29.9 MB] Get:170 http://archive.ubuntu.com/ubuntu jammy/main amd64 mailcap all 3.70+nmu1ubuntu1 [23.8 kB] Get:171 http://archive.ubuntu.com/ubuntu jammy/main amd64 mime-support all 3.66 [3696 B] Get:172 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-numpy amd64 1:1.21.5-1ubuntu22.04.1 [3467 kB] Get:173 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-dateutil all 2.8.1-6 [78.4 kB] Get:174 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 python3-tz all 2022.1-1ubuntu0.22.04.1 [30.7 kB] Get:175 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-pandas-lib amd64 1.3.5+dfsg-3 [3735 kB] Get:176 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-pandas all 1.3.5+dfsg-3 [2680 kB] Get:177 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] Get:178 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-gast all 0.5.2-2 [9394 B] Get:179 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-beniget all 0.4.1-2 [9904 B] Get:180 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-ply all 3.11-5 [47.5 kB] Get:181 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-pythran amd64 0.10.0+ds2-1 [423 kB] Get:182 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-scipy amd64 1.8.0-1exp2ubuntu1 [14.7 MB] Get:183 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python-matplotlib-data all 3.5.1-2build1 [2942 kB] Get:184 http://archive.ubuntu.com/ubuntu jammy/main amd64 libopenjp2-7 amd64 2.4.0-6 [158 kB] Get:185 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-pil amd64 9.0.1-1ubuntu0.3 [419 kB] Get:186 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-tk amd64 3.10.8-1~22.04 [110 kB] Get:187 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 python3-pil.imagetk amd64 9.0.1-1ubuntu0.3 [9616 B] Get:188 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-cycler all 0.11.0-1 [8156 B] Get:189 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-brotli amd64 1.0.9-2build6 [319 kB] Get:190 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-attr all 21.2.0-1 [44.0 kB] Get:191 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-ufolib2 all 0.13.1+dfsg1-1 [32.2 kB] Get:192 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-mpmath all 1.2.1-2 [419 kB] Get:193 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-sympy all 1.9-1 [4312 kB] Get:194 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-appdirs all 1.4.4-2 [11.4 kB] Get:195 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-fs all 2.4.12-1 [84.9 kB] Get:196 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-lxml amd64 4.8.0-1build1 [1150 kB] Get:197 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-lz4 amd64 3.1.3+dfsg-1build3 [33.3 kB] Get:198 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-unicodedata2 amd64 14.0.0+ds-8 [376 kB] Get:199 http://archive.ubuntu.com/ubuntu jammy/universe amd64 unicode-data all 14.0.0-1.1 [8206 kB] Get:200 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-fonttools amd64 4.29.1-2build1 [810 kB] Get:201 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-kiwisolver amd64 1.3.2-1build1 [48.0 kB] Get:202 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-packaging all 21.3-1 [30.7 kB] Get:203 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-matplotlib amd64 3.5.1-2build1 [5937 kB] Get:204 http://archive.ubuntu.com/ubuntu jammy/universe amd64 mpi-default-bin amd64 1.14 [2898 B] Get:205 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-mpi4py amd64 3.1.3-1build2 [465 kB] Get:206 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-h5py-serial amd64 3.6.0-2build1 [872 kB] Get:207 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-h5py all 3.6.0-2build1 [4740 B] Get:208 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-pydot all 1.4.2-1build1 [25.8 kB] Get:209 http://archive.ubuntu.com/ubuntu jammy/main amd64 sphinx-rtd-theme-common all 1.0.0+dfsg-1 [991 kB] Get:210 http://archive.ubuntu.com/ubuntu jammy/universe amd64 numba-doc all 0.55.1-0ubuntu2 [737 kB] Get:211 http://archive.ubuntu.com/ubuntu jammy/main amd64 python-babel-localedata all 2.8.0+dfsg.1-7 [4982 kB] Get:212 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python-odf-doc all 1.4.2-1 [222 kB] Get:213 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-defusedxml all 0.7.1-1 [43.2 kB] Get:214 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-odf all 1.4.2-1 [79.3 kB] Get:215 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python-odf-tools all 1.4.2-1 [27.3 kB] Get:216 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python-tables-data all 3.7.0-2build1 [47.6 kB] Get:217 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-babel all 2.8.0+dfsg.1-7 [85.1 kB] Get:218 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-bottleneck amd64 1.3.2+ds1-2build1 [82.9 kB] Get:219 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-soupsieve all 2.3.1-1 [33.0 kB] Get:220 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-bs4 all 4.10.0-2 [79.1 kB] Get:221 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-chardet all 4.0.0-1 [98.0 kB] Get:222 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-et-xmlfile all 1.0.1-2.1 [9224 B] Get:223 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-webencodings all 0.5.1-4 [11.8 kB] Get:224 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-html5lib all 1.1-3 [87.0 kB] Get:225 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] Get:226 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-jdcal all 1.0-1.3 [7944 B] Get:227 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-markupsafe amd64 2.0.1-2build1 [12.7 kB] Get:228 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-jinja2 all 3.0.3-1ubuntu0.1 [108 kB] Get:229 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-llvmlite amd64 0.38.0-1 [126 kB] Get:230 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-numba amd64 0.55.1-0ubuntu2 [1588 kB] Get:231 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-numexpr amd64 2.8.1-1build1 [86.0 kB] Get:232 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-olefile all 0.46-3 [33.8 kB] Get:233 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-openpyxl all 3.0.9-1 [148 kB] Get:234 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-pluggy all 0.13.0-7.1 [19.0 kB] Get:235 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-py all 1.10.0-1 [71.9 kB] Get:236 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] Get:237 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-pytest all 6.2.5-1ubuntu2 [214 kB] Get:238 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-tables-lib amd64 3.7.0-2build1 [427 kB] Get:239 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-tables all 3.7.0-2build1 [333 kB] Get:240 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-xlwt all 1.3.0-3 [83.7 kB] Get:241 http://archive.ubuntu.com/ubuntu jammy/main amd64 libibverbs-dev amd64 39.0-1 [628 kB] Get:242 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libopenmpi-dev amd64 4.1.2-2ubuntu1 [867 kB] Get:243 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libproj-dev amd64 8.2.1-1 [1594 kB] Get:244 http://archive.ubuntu.com/ubuntu jammy/universe amd64 proj-bin amd64 8.2.1-1 [154 kB] debconf: unable to initialize frontend: Dialog debconf: (Dialog frontend will not work on a dumb terminal, an emacs shell buffer, or without a controlling terminal.) debconf: falling back to frontend: Readline debconf: unable to initialize frontend: Readline debconf: (This frontend requires a controlling tty.) debconf: falling back to frontend: Teletype dpkg-preconfigure: unable to re-open stdin: Fetched 298 MB in 11s (27.1 MB/s) Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 41365 files and directories currently installed.) Preparing to unpack .../000-fonts-lato_2.0-2.1_all.deb ... Unpacking fonts-lato (2.0-2.1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.41-3ubuntu0.1_amd64.deb ... Unpacking libmagic-mgc (1:5.41-3ubuntu0.1) ... Selecting previously unselected package libmagic1:amd64. 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Selecting previously unselected package sphinx-rtd-theme-common. Preparing to unpack .../208-sphinx-rtd-theme-common_1.0.0+dfsg-1_all.deb ... Unpacking sphinx-rtd-theme-common (1.0.0+dfsg-1) ... Selecting previously unselected package numba-doc. Preparing to unpack .../209-numba-doc_0.55.1-0ubuntu2_all.deb ... Unpacking numba-doc (0.55.1-0ubuntu2) ... Selecting previously unselected package python-babel-localedata. Preparing to unpack .../210-python-babel-localedata_2.8.0+dfsg.1-7_all.deb ... Unpacking python-babel-localedata (2.8.0+dfsg.1-7) ... Selecting previously unselected package python-odf-doc. Preparing to unpack .../211-python-odf-doc_1.4.2-1_all.deb ... Unpacking python-odf-doc (1.4.2-1) ... Selecting previously unselected package python3-defusedxml. Preparing to unpack .../212-python3-defusedxml_0.7.1-1_all.deb ... Unpacking python3-defusedxml (0.7.1-1) ... Selecting previously unselected package python3-odf. Preparing to unpack .../213-python3-odf_1.4.2-1_all.deb ... 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Selecting previously unselected package python3-tables-lib. Preparing to unpack .../237-python3-tables-lib_3.7.0-2build1_amd64.deb ... Unpacking python3-tables-lib (3.7.0-2build1) ... Selecting previously unselected package python3-tables. Preparing to unpack .../238-python3-tables_3.7.0-2build1_all.deb ... Unpacking python3-tables (3.7.0-2build1) ... Selecting previously unselected package python3-xlwt. Preparing to unpack .../239-python3-xlwt_1.3.0-3_all.deb ... Unpacking python3-xlwt (1.3.0-3) ... Selecting previously unselected package libibverbs-dev:amd64. Preparing to unpack .../240-libibverbs-dev_39.0-1_amd64.deb ... Unpacking libibverbs-dev:amd64 (39.0-1) ... Selecting previously unselected package libopenmpi-dev:amd64. Preparing to unpack .../241-libopenmpi-dev_4.1.2-2ubuntu1_amd64.deb ... Unpacking libopenmpi-dev:amd64 (4.1.2-2ubuntu1) ... Selecting previously unselected package libproj-dev:amd64. Preparing to unpack .../242-libproj-dev_8.2.1-1_amd64.deb ... Unpacking libproj-dev:amd64 (8.2.1-1) ... Selecting previously unselected package proj-bin. Preparing to unpack .../243-proj-bin_8.2.1-1_amd64.deb ... Unpacking proj-bin (8.2.1-1) ... Setting up dh-python (5.20220403) ... Setting up libpipeline1:amd64 (1.5.5-1) ... Setting up libgraphite2-3:amd64 (1.3.14-1build2) ... Setting up liblcms2-2:amd64 (2.12~rc1-2build2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libtbbmalloc2:amd64 (2021.5.0-7ubuntu2) ... Setting up libpixman-1-0:amd64 (0.40.0-1ubuntu0.22.04.1) ... Setting up python3-attr (21.2.0-1) ... Setting up libgeos3.10.2:amd64 (3.10.2-1) ... Setting up libpciaccess0:amd64 (0.16-3) ... Setting up fontconfig (2.13.1-4.2ubuntu5) ... Regenerating fonts cache... done. Setting up libjpeg-turbo8-dev:amd64 (2.1.2-0ubuntu1) ... Setting up libncurses-dev:amd64 (6.3-2ubuntu0.1) ... Setting up libboost1.74-dev:amd64 (1.74.0-14ubuntu3) ... Setting up fonts-lato (2.0-2.1) ... Setting up proj-data (8.2.1-1) ... Setting up hdf5-helpers (1.10.7+repack-4ubuntu2) ... Setting up libxrender1:amd64 (1:0.9.10-1build4) ... Setting up python3-py (1.10.0-1) ... Setting up libdatrie1:amd64 (0.2.13-2) ... Setting up python3-jdcal (1.0-1.3) ... Setting up libgslcblas0:amd64 (2.7.1+dfsg-3) ... Setting up libmagic-mgc (1:5.41-3ubuntu0.1) ... Setting up python3-lz4 (3.1.3+dfsg-1build3) ... Setting up libxcb-render0:amd64 (1.14-3ubuntu3) ... Setting up python3-defusedxml (0.7.1-1) ... Setting up python3-unicodedata2 (14.0.0+ds-8) ... Setting up fonts-lyx (2.3.6-1) ... Setting up python3-olefile (0.46-3) ... Setting up libwebpdemux2:amd64 (1.2.2-2ubuntu0.22.04.2) ... Setting up python3-ply (3.11-5) ... Setting up liblab-gamut1:amd64 (2.42.2-6) ... Setting up x11-common (1:7.7+23ubuntu2) ... debconf: unable to initialize frontend: Dialog debconf: (Dialog frontend will not work on a dumb terminal, an emacs shell buffer, or without a controlling terminal.) debconf: falling back to frontend: Readline Setting up libmagic1:amd64 (1:5.41-3ubuntu0.1) ... Setting up python3-gast (0.5.2-2) ... Setting up libjbig-dev:amd64 (2.1-3.1ubuntu0.22.04.1) ... Setting up libgsl27:amd64 (2.7.1+dfsg-3) ... Setting up libqhull-r8.0:amd64 (2020.2-4) ... Setting up liblzo2-2:amd64 (2.10-2build3) ... Setting up libtbb12:amd64 (2021.5.0-7ubuntu2) ... Setting up libxcb-shm0:amd64 (1.14-3ubuntu3) ... Setting up file (1:5.41-3ubuntu0.1) ... Setting up libproj22:amd64 (8.2.1-1) ... Setting up libcurl4-gnutls-dev:amd64 (7.81.0-1ubuntu1.16) ... Setting up libffi-dev:amd64 (3.4.2-4) ... Setting up python3-markupsafe (2.0.1-2build1) ... Setting up python3-webencodings (0.5.1-4) ... Setting up libcairo2:amd64 (1.16.0-5ubuntu2) ... Setting up libaec0:amd64 (1.0.6-1) ... Setting up python3-tz (2022.1-1ubuntu0.22.04.1) ... Setting up python-babel-localedata (2.8.0+dfsg.1-7) ... Setting up libsnappy1v5:amd64 (1.1.8-1build3) ... Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu1) ... Setting up unicode-data (14.0.0-1.1) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-5) ... Setting up python3-beniget (0.4.1-2) ... Setting up libxsimd-dev:amd64 (7.6.0-2) ... Setting up python3-decorator (4.4.2-0ubuntu1) ... Setting up autotools-dev (20220109.1) ... Setting up python3-pygments (2.11.2+dfsg-2) ... Setting up libz3-4:amd64 (4.8.12-1) ... Setting up libblas3:amd64 (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up python3-packaging (21.3-1) ... Setting up libgmpxx4ldbl:amd64 (2:6.2.1+dfsg-3ubuntu1) ... Setting up libpfm4:amd64 (4.11.1+git32-gd0b85fb-1ubuntu0.1) ... Setting up python3-chardet (4.0.0-1) ... Setting up libllvm11:amd64 (1:11.1.0-6) ... Setting up libjs-jquery-ui (1.13.1+dfsg-1) ... Setting up libsqlite3-dev:amd64 (3.37.2-2ubuntu0.3) ... Setting up libpathplan4:amd64 (2.42.2-6) ... Setting up python3-brotli (1.0.9-2build6) ... Setting up libann0 (1.1.2+doc-7build1) ... Setting up liblzf1:amd64 (3.6-3) ... Setting up libsigsegv2:amd64 (2.13-1ubuntu3) ... Setting up python3-cycler (0.11.0-1) ... Setting up python-odf-doc (1.4.2-1) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libssl-dev:amd64 (3.0.2-0ubuntu1.15) ... Setting up python3-kiwisolver (1.3.2-1build1) ... Setting up libhwloc15:amd64 (2.7.0-2ubuntu1) ... Setting up python3-xlwt (1.3.0-3) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-1build3) ... Setting up libevent-2.1-7:amd64 (2.1.12-stable-1build3) ... Setting up cython3 (0.29.28-1ubuntu3) ... Setting up libtcl8.6:amd64 (8.6.12+dfsg-1build1) ... Setting up binfmt-support (2.2.1-2) ... update-binfmts: warning: python3.10 already enabled in kernel. Created symlink /etc/systemd/system/multi-user.target.wants/binfmt-support.service → /lib/systemd/system/binfmt-support.service. Setting up icu-devtools (70.1-2) ... Setting up libgeos-c1v5:amd64 (3.10.2-1) ... Setting up python3-html5lib (1.1-3) ... Setting up libltdl7:amd64 (2.4.6-15build2) ... Setting up python3-toml (0.10.2-1) ... Setting up libgfortran5:amd64 (12.3.0-1ubuntu1~22.04) ... Setting up python3-pluggy (0.13.0-7.1) ... Setting up llvm-11-linker-tools (1:11.1.0-6) ... Setting up liblzma-dev:amd64 (5.2.5-2ubuntu1) ... Setting up libnuma1:amd64 (2.0.14-3ubuntu2) ... Setting up ocl-icd-libopencl1:amd64 (2.2.14-3) ... Setting up libxslt1.1:amd64 (1.1.34-4ubuntu0.22.04.1) ... Setting up libblosc1:amd64 (1.21.1+ds2-2) ... Setting up fonts-liberation (1:1.07.4-11) ... Setting up libnl-3-200:amd64 (3.5.0-0.1) ... Setting up python3-et-xmlfile (1.0.1-2.1) ... Setting up libpsm2-2 (11.2.185-1) ... Setting up openmpi-common (4.1.2-2ubuntu1) ... Setting up libopenjp2-7:amd64 (2.4.0-6) ... Setting up libharfbuzz0b:amd64 (2.7.4-1ubuntu3.1) ... Setting up libthai-data (0.1.29-1build1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up libcdt5:amd64 (2.42.2-6) ... Setting up libcgraph6:amd64 (2.42.2-6) ... Setting up libboost-dev:amd64 (1.74.0.3ubuntu7) ... Setting up libxss1:amd64 (1:1.2.3-1build2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libjpeg8-dev:amd64 (8c-2ubuntu10) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python-matplotlib-data (3.5.1-2build1) ... Setting up libwebpmux3:amd64 (1.2.2-2ubuntu0.22.04.2) ... Setting up libdeflate-dev:amd64 (1.10-2) ... Setting up python3-appdirs (1.4.4-2) ... Setting up mailcap (3.70+nmu1ubuntu1) ... Setting up libicu-dev:amd64 (70.1-2) ... Setting up python3-soupsieve (2.3.1-1) ... Setting up python-tables-data (3.7.0-2build1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (1.0.0+dfsg-1) ... Setting up libonig5:amd64 (6.9.7.1-2build1) ... Setting up libsz2:amd64 (1.0.6-1) ... Setting up libtiffxx5:amd64 (4.3.0-6ubuntu0.8) ... Setting up python3-odf (1.4.2-1) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1build3) ... Setting up python3-sympy (1.9-1) ... Setting up libtinfo-dev:amd64 (6.3-2ubuntu0.1) ... Setting up libgts-bin (0.7.6+darcs121130-5) ... Setting up libz3-dev:amd64 (4.8.12-1) ... Setting up libice6:amd64 (2:1.0.10-1build2) ... Setting up libevent-extra-2.1-7:amd64 (2.1.12-stable-1build3) ... Setting up liblapack3:amd64 (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxft2:amd64 (2.3.4-1) ... Setting up llvm-11-runtime (1:11.1.0-6) ... Setting up libgsl-dev (2.7.1+dfsg-3) ... Setting up libopenblas0-pthread:amd64 (0.3.20+ds-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libgmp-dev:amd64 (2:6.2.1+dfsg-3ubuntu1) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15build2) ... Setting up python3-babel (2.8.0+dfsg.1-7) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up libjq1:amd64 (1.6-2.1ubuntu3) ... Setting up llvm-11-tools (1:11.1.0-6) ... Setting up libgfortran-11-dev:amd64 (11.4.0-1ubuntu1~22.04) ... Setting up python3-pytest (6.2.5-1ubuntu2) ... Setting up libtk8.6:amd64 (8.6.12-1build1) ... Setting up libaec-dev:amd64 (1.0.6-1) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu10) ... Setting up python-odf-tools (1.4.2-1) ... Setting up libevent-openssl-2.1-7:amd64 (2.1.12-stable-1build3) ... Setting up proj-bin (8.2.1-1) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up llvm-11 (1:11.1.0-6) ... Setting up libhwloc-plugins:amd64 (2.7.0-2ubuntu1) ... Setting up python3-bs4 (4.10.0-2) ... Setting up libnuma-dev:amd64 (2.0.14-3ubuntu2) ... Setting up libnl-route-3-200:amd64 (3.5.0-0.1) ... Setting up python3-fs (2.4.12-1) ... Setting up libclang-cpp11 (1:11.1.0-6) ... Setting up libthai0:amd64 (0.1.29-1build1) ... Setting up python3-llvmlite (0.38.0-1) ... Setting up python3-jinja2 (3.0.3-1ubuntu0.1) ... Setting up libxml2-dev:amd64 (2.9.13+dfsg-1ubuntu0.4) ... Setting up libtiff-dev:amd64 (4.3.0-6ubuntu0.8) ... Setting up libgeos-dev (3.10.2-1) ... Setting up libraqm0:amd64 (0.7.0-4ubuntu1) ... Setting up libevent-dev (2.1.12-stable-1build3) ... Setting up libproj-dev:amd64 (8.2.1-1) ... Setting up python3-numpy (1:1.21.5-1ubuntu22.04.1) ... Setting up gfortran-11 (11.4.0-1ubuntu1~22.04) ... Setting up autoconf (2.71-2) ... Setting up libgvpr2:amd64 (2.42.2-6) ... Setting up libhdf5-103-1:amd64 (1.10.7+repack-4ubuntu2) ... Setting up libnl-3-dev:amd64 (3.5.0-0.1) ... Setting up libopenblas0:amd64 (0.3.20+ds-1) ... Setting up python3-lxml:amd64 (4.8.0-1build1) ... Setting up jq (1.6-2.1ubuntu3) ... Setting up libhdf5-cpp-103-1:amd64 (1.10.7+repack-4ubuntu2) ... Setting up numba-doc (0.55.1-0ubuntu2) ... Setting up libsm6:amd64 (2:1.2.3-1build2) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-10) ... Setting up libhdf5-hl-100:amd64 (1.10.7+repack-4ubuntu2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libopenblas-pthread-dev:amd64 (0.3.20+ds-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libibverbs1:amd64 (39.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1build2) ... Setting up llvm-11-dev (1:11.1.0-6) ... Setting up libpmix2:amd64 (4.1.2-2ubuntu1) ... Setting up ibverbs-providers:amd64 (39.0-1) ... Setting up python3-tables-lib (3.7.0-2build1) ... Setting up blt (2.5.3+dfsg-4.1build2) ... Setting up python3-pandas-lib:amd64 (1.3.5+dfsg-3) ... Setting up libpango-1.0-0:amd64 (1.50.6+ds-2ubuntu1) ... Setting up python3-h5py-serial (3.6.0-2build1) ... Setting up python3-tk:amd64 (3.10.8-1~22.04) ... Setting up gfortran (4:11.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libnl-route-3-dev:amd64 (3.5.0-0.1) ... Setting up libltdl-dev:amd64 (2.4.6-15build2) ... Setting up python3-pil:amd64 (9.0.1-1ubuntu0.3) ... Setting up libopenblas-dev:amd64 (0.3.20+ds-1) ... Setting up libhdf5-hl-cpp-100:amd64 (1.10.7+repack-4ubuntu2) ... Setting up python3-pandas (1.3.5+dfsg-3) ... Setting up python3-pil.imagetk:amd64 (9.0.1-1ubuntu0.3) ... Setting up python3-openpyxl (3.0.9-1) ... Setting up python3-h5py (3.6.0-2build1) ... Setting up python3-bottleneck (1.3.2+ds1-2build1) ... Setting up libhdf5-fortran-102:amd64 (1.10.7+repack-4ubuntu2) ... Setting up python3-numexpr (2.8.1-1build1) ... Setting up libxt6:amd64 (1:1.2.1-1) ... Setting up python3-pythran (0.10.0+ds2-1) ... Setting up libhdf5-hl-fortran-100:amd64 (1.10.7+repack-4ubuntu2) ... Setting up libhwloc-dev:amd64 (2.7.0-2ubuntu1) ... Setting up libpangoft2-1.0-0:amd64 (1.50.6+ds-2ubuntu1) ... Setting up libpmix-dev:amd64 (4.1.2-2ubuntu1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.6+ds-2ubuntu1) ... Setting up librdmacm1:amd64 (39.0-1) ... Setting up libucx0:amd64 (1.12.1~rc2-1) ... Setting up libxmu6:amd64 (2:1.1.3-3) ... Setting up python3-scipy (1.8.0-1exp2ubuntu1) ... Setting up libcoarrays-dev:amd64 (2.9.2-3) ... Setting up libxaw7:amd64 (2:1.0.14-1) ... Setting up python3-tables (3.7.0-2build1) ... Setting up libibverbs-dev:amd64 (39.0-1) ... Setting up python3-numba (0.55.1-0ubuntu2) ... update-alternatives: using /usr/share/python3-numba/numba to provide /usr/bin/numba (numba) in auto mode Setting up libhdf5-dev (1.10.7+repack-4ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libgvc6 (2.42.2-6) ... Setting up graphviz (2.42.2-6) ... Setting up libfabric1:amd64 (1.11.0-3) ... Setting up python3-pydot (1.4.2-1build1) ... Setting up libopenmpi3:amd64 (4.1.2-2ubuntu1) ... Setting up libcaf-openmpi-3:amd64 (2.9.2-3) ... Setting up openmpi-bin (4.1.2-2ubuntu1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up mpi-default-bin (1.14) ... Setting up python3-mpi4py (3.1.3-1build2) ... Setting up libcoarrays-openmpi-dev:amd64 (2.9.2-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/open-coarrays/openmpi/bin/caf to provide /usr/bin/caf.openmpi (caf-openmpi) in auto mode update-alternatives: using /usr/bin/caf.openmpi to provide /usr/bin/caf (caf) in auto mode Setting up libopenmpi-dev:amd64 (4.1.2-2ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up python3-fonttools (4.29.1-2build1) ... Setting up python3-ufolib2 (0.13.1+dfsg1-1) ... Setting up python3-matplotlib (3.5.1-2build1) ... Setting up nest (3.7-2ubuntu1ppa1-1641~202404150721~ubuntu22.04.1) ... Processing triggers for libc-bin (2.35-0ubuntu3.7) ... + sudo apt install -y python3-pip python3-tk libigraph-dev python3-graph-tool python3-cairo python3-cairocffi WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Reading package lists... Building dependency tree... Reading state information... python3-tk is already the newest version (3.10.8-1~22.04). python3-tk set to manually installed. python3-pip is already the newest version (22.0.2+dfsg-1ubuntu0.4). The following additional packages will be installed: adwaita-icon-theme at-spi2-core dbus-user-session dconf-gsettings-backend dconf-service gir1.2-atk-1.0 gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 gir1.2-gtk-3.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme libamd2 libarpack2 libatk-bridge2.0-0 libatk1.0-0 libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libboost-context1.74.0 libboost-iostreams1.74.0 libboost-python1.74.0 libboost-regex1.74.0 libcairo-gobject2 libcairomm-1.0-1v5 libcolamd2 libcolord2 libcups2 libcxsparse3 libdconf1 libepoxy0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libglpk40 libgtk-3-0 libgtk-3-bin libgtk-3-common libigraph2 libpangoxft-1.0-0 libplfit0 librsvg2-2 librsvg2-common libsigc++-2.0-0v5 libsuitesparseconfig5 libwayland-client0 libwayland-cursor0 libwayland-egl1 libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxkbcommon0 libxrandr2 libxtst6 python3-cffi python3-pycparser python3-xcffib session-migration ubuntu-mono Suggested packages: colord cups-common libiodbc2-dev default-libmysqlclient-dev gvfs libigraph-doc pkg-config plfit plfit-doc librsvg2-bin python-cairocffi-doc Recommended packages: libgv-python python-matplotlib python-cairo python-gi-cairo python-gi The following NEW packages will be installed: adwaita-icon-theme at-spi2-core dbus-user-session dconf-gsettings-backend dconf-service gir1.2-atk-1.0 gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 gir1.2-gtk-3.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme libamd2 libarpack2 libatk-bridge2.0-0 libatk1.0-0 libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libboost-context1.74.0 libboost-iostreams1.74.0 libboost-python1.74.0 libboost-regex1.74.0 libcairo-gobject2 libcairomm-1.0-1v5 libcolamd2 libcolord2 libcups2 libcxsparse3 libdconf1 libepoxy0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libglpk40 libgtk-3-0 libgtk-3-bin libgtk-3-common libigraph-dev libigraph2 libpangoxft-1.0-0 libplfit0 librsvg2-2 librsvg2-common libsigc++-2.0-0v5 libsuitesparseconfig5 libwayland-client0 libwayland-cursor0 libwayland-egl1 libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxkbcommon0 libxrandr2 libxtst6 python3-cairo python3-cairocffi python3-cffi python3-graph-tool python3-pycparser python3-xcffib session-migration ubuntu-mono 0 upgraded, 71 newly installed, 0 to remove and 4 not upgraded. Need to get 67.7 MB of archives. After this operation, 451 MB of additional disk space will be used. Get:1 http://archive.ubuntu.com/ubuntu jammy/main amd64 hicolor-icon-theme all 0.17-2 [9976 B] Get:2 https://downloads.skewed.de/apt jammy/main amd64 python3-graph-tool amd64 2.59 [51.2 MB] Get:3 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libgdk-pixbuf2.0-common all 2.42.8+dfsg-1ubuntu0.2 [5530 B] Get:4 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.8+dfsg-1ubuntu0.2 [148 kB] Get:5 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 gtk-update-icon-cache amd64 3.24.33-1ubuntu2 [31.4 kB] Get:6 http://archive.ubuntu.com/ubuntu jammy/main amd64 humanity-icon-theme all 0.6.16 [1282 kB] Get:7 http://archive.ubuntu.com/ubuntu jammy/main amd64 ubuntu-mono all 20.10-0ubuntu2 [153 kB] Get:8 http://archive.ubuntu.com/ubuntu jammy/main amd64 adwaita-icon-theme all 41.0-1ubuntu1 [3444 kB] Get:9 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxi6 amd64 2:1.8-1build1 [32.6 kB] Get:10 http://archive.ubuntu.com/ubuntu jammy/main amd64 libatspi2.0-0 amd64 2.44.0-3 [80.9 kB] Get:11 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxtst6 amd64 2:1.2.3-1build4 [13.4 kB] Get:12 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 dbus-user-session amd64 1.12.20-2ubuntu4.1 [9442 B] Get:13 http://archive.ubuntu.com/ubuntu jammy/main amd64 libdconf1 amd64 0.40.0-3 [40.5 kB] Get:14 http://archive.ubuntu.com/ubuntu jammy/main amd64 dconf-service amd64 0.40.0-3 [28.5 kB] Get:15 http://archive.ubuntu.com/ubuntu jammy/main amd64 dconf-gsettings-backend amd64 0.40.0-3 [22.8 kB] Get:16 http://archive.ubuntu.com/ubuntu jammy/main amd64 session-migration amd64 0.3.6 [9774 B] Get:17 http://archive.ubuntu.com/ubuntu jammy/main amd64 gsettings-desktop-schemas all 42.0-1ubuntu1 [31.1 kB] Get:18 http://archive.ubuntu.com/ubuntu jammy/main amd64 at-spi2-core amd64 2.44.0-3 [54.4 kB] Get:19 http://archive.ubuntu.com/ubuntu jammy/main amd64 libatk1.0-data all 2.36.0-3build1 [2824 B] Get:20 http://archive.ubuntu.com/ubuntu jammy/main amd64 libatk1.0-0 amd64 2.36.0-3build1 [51.9 kB] Get:21 http://archive.ubuntu.com/ubuntu jammy/main amd64 gir1.2-atk-1.0 amd64 2.36.0-3build1 [21.0 kB] Get:22 http://archive.ubuntu.com/ubuntu jammy/main amd64 gir1.2-freedesktop amd64 1.72.0-1 [22.3 kB] Get:23 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 gir1.2-gdkpixbuf-2.0 amd64 2.42.8+dfsg-1ubuntu0.2 [9482 B] Get:24 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 gir1.2-harfbuzz-0.0 amd64 2.7.4-1ubuntu3.1 [31.6 kB] Get:25 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libpangoxft-1.0-0 amd64 1.50.6+ds-2ubuntu1 [31.0 kB] Get:26 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 gir1.2-pango-1.0 amd64 1.50.6+ds-2ubuntu1 [44.0 kB] Get:27 http://archive.ubuntu.com/ubuntu jammy/main amd64 libatk-bridge2.0-0 amd64 2.38.0-3 [66.6 kB] Get:28 http://archive.ubuntu.com/ubuntu jammy/main amd64 libcairo-gobject2 amd64 1.16.0-5ubuntu2 [19.4 kB] Get:29 http://archive.ubuntu.com/ubuntu jammy/main amd64 libcolord2 amd64 1.4.6-1 [155 kB] Get:30 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libavahi-common-data amd64 0.8-5ubuntu5.2 [23.8 kB] Get:31 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libavahi-common3 amd64 0.8-5ubuntu5.2 [23.9 kB] Get:32 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libavahi-client3 amd64 0.8-5ubuntu5.2 [28.0 kB] Get:33 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libcups2 amd64 2.4.1op1-1ubuntu4.8 [264 kB] Get:34 http://archive.ubuntu.com/ubuntu jammy/main amd64 libepoxy0 amd64 1.5.10-1 [237 kB] Get:35 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libwayland-client0 amd64 1.20.0-1ubuntu0.1 [25.9 kB] Get:36 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libwayland-cursor0 amd64 1.20.0-1ubuntu0.1 [10.7 kB] Get:37 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libwayland-egl1 amd64 1.20.0-1ubuntu0.1 [5582 B] Get:38 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxcomposite1 amd64 1:0.4.5-1build2 [7192 B] Get:39 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxfixes3 amd64 1:6.0.0-1 [11.7 kB] Get:40 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxcursor1 amd64 1:1.2.0-2build4 [20.9 kB] Get:41 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxdamage1 amd64 1:1.1.5-2build2 [7154 B] Get:42 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxinerama1 amd64 2:1.1.4-3 [7382 B] Get:43 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxkbcommon0 amd64 1.4.0-1 [125 kB] Get:44 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxrandr2 amd64 2:1.5.2-1build1 [20.4 kB] Get:45 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libgtk-3-common all 3.24.33-1ubuntu2 [239 kB] Get:46 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libgtk-3-0 amd64 3.24.33-1ubuntu2 [3053 kB] Get:47 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 gir1.2-gtk-3.0 amd64 3.24.33-1ubuntu2 [240 kB] Get:48 http://archive.ubuntu.com/ubuntu jammy/main amd64 libsuitesparseconfig5 amd64 1:5.10.1+dfsg-4build1 [10.4 kB] Get:49 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libamd2 amd64 1:5.10.1+dfsg-4build1 [21.6 kB] Get:50 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libarpack2 amd64 3.8.0-1 [92.4 kB] Get:51 http://archive.ubuntu.com/ubuntu jammy/main amd64 libboost-context1.74.0 amd64 1.74.0-14ubuntu3 [223 kB] Get:52 http://archive.ubuntu.com/ubuntu jammy/main amd64 libboost-iostreams1.74.0 amd64 1.74.0-14ubuntu3 [245 kB] Get:53 http://archive.ubuntu.com/ubuntu jammy/main amd64 libboost-python1.74.0 amd64 1.74.0-14ubuntu3 [299 kB] Get:54 http://archive.ubuntu.com/ubuntu jammy/main amd64 libboost-regex1.74.0 amd64 1.74.0-14ubuntu3 [511 kB] Get:55 http://archive.ubuntu.com/ubuntu jammy/main amd64 libsigc++-2.0-0v5 amd64 2.10.4-2ubuntu3 [12.1 kB] Get:56 http://archive.ubuntu.com/ubuntu jammy/main amd64 libcairomm-1.0-1v5 amd64 1.12.2-4build3 [45.1 kB] Get:57 http://archive.ubuntu.com/ubuntu jammy/main amd64 libcolamd2 amd64 1:5.10.1+dfsg-4build1 [18.0 kB] Get:58 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libcxsparse3 amd64 1:5.10.1+dfsg-4build1 [70.8 kB] Get:59 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libgdk-pixbuf2.0-bin amd64 2.42.8+dfsg-1ubuntu0.2 [14.2 kB] Get:60 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libglpk40 amd64 5.0-1 [361 kB] Get:61 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libgtk-3-bin amd64 3.24.33-1ubuntu2 [69.5 kB] Get:62 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libplfit0 amd64 0.9.3+ds-1ubuntu1 [28.7 kB] Get:63 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libigraph2 amd64 0.9.6+ds-2ubuntu1 [823 kB] Get:64 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libigraph-dev amd64 0.9.6+ds-2ubuntu1 [69.4 kB] Get:65 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 librsvg2-2 amd64 2.52.5+dfsg-3ubuntu0.2 [2974 kB] Get:66 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 librsvg2-common amd64 2.52.5+dfsg-3ubuntu0.2 [17.7 kB] Get:67 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-cairo amd64 1.20.1-3build1 [73.7 kB] Get:68 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-pycparser all 2.21-1 [76.9 kB] Get:69 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-cffi all 1.15.0-1build2 [72.6 kB] Get:70 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-xcffib all 0.11.1-2 [63.3 kB] Get:71 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-cairocffi all 1.2.0-2 [70.3 kB] debconf: unable to initialize frontend: Dialog debconf: (Dialog frontend will not work on a dumb terminal, an emacs shell buffer, or without a controlling terminal.) debconf: falling back to frontend: Readline debconf: unable to initialize frontend: Readline debconf: (This frontend requires a controlling tty.) debconf: falling back to frontend: Teletype dpkg-preconfigure: unable to re-open stdin: Fetched 67.7 MB in 1s (57.6 MB/s) Selecting previously unselected package hicolor-icon-theme. 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Preparing to unpack .../70-python3-graph-tool_2.59_amd64.deb ... Unpacking python3-graph-tool (2.59) ... Setting up session-migration (0.3.6) ... Created symlink /etc/systemd/user/graphical-session-pre.target.wants/session-migration.service → /usr/lib/systemd/user/session-migration.service. Setting up gir1.2-freedesktop:amd64 (1.72.0-1) ... Setting up libxdamage1:amd64 (1:1.1.5-2build2) ... Setting up python3-cairo:amd64 (1.20.1-3build1) ... Setting up libpangoxft-1.0-0:amd64 (1.50.6+ds-2ubuntu1) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up libxi6:amd64 (2:1.8-1build1) ... Setting up libboost-iostreams1.74.0:amd64 (1.74.0-14ubuntu3) ... Setting up libxtst6:amd64 (2:1.2.3-1build4) ... Setting up libgdk-pixbuf2.0-common (2.42.8+dfsg-1ubuntu0.2) ... Setting up libarpack2:amd64 (3.8.0-1) ... Setting up libatspi2.0-0:amd64 (2.44.0-3) ... Setting up gir1.2-harfbuzz-0.0:amd64 (2.7.4-1ubuntu3.1) ... Setting up libcolord2:amd64 (1.4.6-1) ... 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Setting up libwayland-egl1:amd64 (1.20.0-1ubuntu0.1) ... Setting up libboost-python1.74.0 (1.74.0-14ubuntu3) ... Setting up libxcomposite1:amd64 (1:0.4.5-1build2) ... Setting up libsuitesparseconfig5:amd64 (1:5.10.1+dfsg-4build1) ... Setting up libxkbcommon0:amd64 (1.4.0-1) ... Setting up libwayland-client0:amd64 (1.20.0-1ubuntu0.1) ... Setting up libamd2:amd64 (1:5.10.1+dfsg-4build1) ... Setting up gtk-update-icon-cache (3.24.33-1ubuntu2) ... Setting up libcolamd2:amd64 (1:5.10.1+dfsg-4build1) ... Setting up gir1.2-gdkpixbuf-2.0:amd64 (2.42.8+dfsg-1ubuntu0.2) ... Setting up gir1.2-atk-1.0:amd64 (2.36.0-3build1) ... Setting up libxcursor1:amd64 (1:1.2.0-2build4) ... Setting up python3-cffi (1.15.0-1build2) ... Setting up libavahi-common3:amd64 (0.8-5ubuntu5.2) ... Setting up dconf-service (0.40.0-3) ... Setting up librsvg2-2:amd64 (2.52.5+dfsg-3ubuntu0.2) ... Setting up libcairomm-1.0-1v5:amd64 (1.12.2-4build3) ... Setting up libatk-bridge2.0-0:amd64 (2.38.0-3) ... Setting up libglpk40:amd64 (5.0-1) ... Setting up libigraph2:amd64 (0.9.6+ds-2ubuntu1) ... Setting up librsvg2-common:amd64 (2.52.5+dfsg-3ubuntu0.2) ... Setting up python3-xcffib (0.11.1-2) ... Setting up libgdk-pixbuf2.0-bin (2.42.8+dfsg-1ubuntu0.2) ... Setting up libwayland-cursor0:amd64 (1.20.0-1ubuntu0.1) ... Setting up libavahi-client3:amd64 (0.8-5ubuntu5.2) ... Setting up libigraph-dev:amd64 (0.9.6+ds-2ubuntu1) ... Setting up python3-graph-tool (2.59) ... Setting up dconf-gsettings-backend:amd64 (0.40.0-3) ... Setting up python3-cairocffi (1.2.0-2) ... Setting up libcups2:amd64 (2.4.1op1-1ubuntu4.8) ... Setting up libgtk-3-common (3.24.33-1ubuntu2) ... Setting up gsettings-desktop-schemas (42.0-1ubuntu1) ... Setting up adwaita-icon-theme (41.0-1ubuntu1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up humanity-icon-theme (0.6.16) ... Setting up ubuntu-mono (20.10-0ubuntu2) ... Processing triggers for libglib2.0-0:amd64 (2.72.4-0ubuntu2.2) ... Setting up libgtk-3-0:amd64 (3.24.33-1ubuntu2) ... Processing triggers for libc-bin (2.35-0ubuntu3.7) ... Setting up gir1.2-gtk-3.0:amd64 (3.24.33-1ubuntu2) ... Setting up libgtk-3-bin (3.24.33-1ubuntu2) ... Setting up at-spi2-core (2.44.0-3) ... Processing triggers for libgdk-pixbuf-2.0-0:amd64 (2.42.8+dfsg-1ubuntu0.2) ... + pip3 install --upgrade pip setuptools Defaulting to user installation because normal site-packages is not writeable Requirement already satisfied: pip in /usr/lib/python3/dist-packages (22.0.2) Collecting pip Downloading pip-24.0-py3-none-any.whl (2.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 93.0 MB/s eta 0:00:00 Requirement already satisfied: setuptools in /usr/lib/python3/dist-packages (59.6.0) Collecting setuptools Downloading setuptools-69.5.1-py3-none-any.whl (894 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 894.6/894.6 KB 162.2 MB/s eta 0:00:00 Installing collected packages: setuptools, pip WARNING: The scripts pip, pip3 and pip3.10 are installed in '/home/build/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. Successfully installed pip-24.0 setuptools-69.5.1 + pip install --upgrade numpy scipy cython mpi4py Defaulting to user installation because normal site-packages is not writeable Requirement already satisfied: numpy in /usr/lib/python3/dist-packages (1.21.5) Collecting numpy Downloading numpy-1.26.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.0/61.0 kB 6.9 MB/s eta 0:00:00 Requirement already satisfied: scipy in /usr/lib/python3/dist-packages (1.8.0) Collecting scipy Downloading scipy-1.13.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.6/60.6 kB 28.9 MB/s eta 0:00:00 Requirement already satisfied: cython in /usr/lib/python3/dist-packages (0.29.28) Collecting cython Downloading Cython-3.0.10-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.2 kB) Requirement already satisfied: mpi4py in /usr/lib/python3/dist-packages (3.1.3) Collecting mpi4py Downloading mpi4py-3.1.6.tar.gz (2.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.4/2.4 MB 52.0 MB/s eta 0:00:00 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Downloading numpy-1.26.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.2/18.2 MB 157.9 MB/s eta 0:00:00 Downloading scipy-1.13.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (38.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 38.6/38.6 MB 124.4 MB/s eta 0:00:00 Downloading Cython-3.0.10-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.6/3.6 MB 181.2 MB/s eta 0:00:00 Building wheels for collected packages: mpi4py Building wheel for mpi4py (pyproject.toml): started Building wheel for mpi4py (pyproject.toml): finished with status 'done' Created wheel for mpi4py: filename=mpi4py-3.1.6-cp310-cp310-linux_x86_64.whl size=2746320 sha256=be1b8195dbf1c8abf38d366f451274f1b5a8c8aab88f49c841da2bfae56a0fe9 Stored in directory: /home/build/.cache/pip/wheels/4c/ca/89/8fc1fb1c620afca13bb41c630b1f948bbf446e0aaa4b762e10 Successfully built mpi4py Installing collected packages: numpy, mpi4py, cython, scipy WARNING: The script f2py is installed in '/home/build/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. WARNING: The scripts cygdb, cython and cythonize are installed in '/home/build/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. Successfully installed cython-3.0.10 mpi4py-3.1.6 numpy-1.26.4 scipy-1.13.0 + pip install --upgrade 'networkx>=2.4' python-igraph Defaulting to user installation because normal site-packages is not writeable Collecting networkx>=2.4 Downloading networkx-3.3-py3-none-any.whl.metadata (5.1 kB) Collecting python-igraph Downloading python_igraph-0.11.4-py3-none-any.whl.metadata (2.8 kB) Collecting igraph==0.11.4 (from python-igraph) Downloading igraph-0.11.4-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.9 kB) Collecting texttable>=1.6.2 (from igraph==0.11.4->python-igraph) Downloading texttable-1.7.0-py2.py3-none-any.whl.metadata (9.8 kB) Downloading networkx-3.3-py3-none-any.whl (1.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 128.8 MB/s eta 0:00:00 Downloading python_igraph-0.11.4-py3-none-any.whl (9.1 kB) Downloading igraph-0.11.4-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.3/3.3 MB 122.3 MB/s eta 0:00:00 Downloading texttable-1.7.0-py2.py3-none-any.whl (10 kB) Installing collected packages: texttable, networkx, igraph, python-igraph WARNING: The script igraph is installed in '/home/build/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. Successfully installed igraph-0.11.4 networkx-3.3 python-igraph-0.11.4 texttable-1.7.0 + pip install --upgrade 'matplotlib<3.7' seaborn shapely svg.path dxfgrabber cartopy geopandas descartes lxml Defaulting to user installation because normal site-packages is not writeable Requirement already satisfied: matplotlib<3.7 in /usr/lib/python3/dist-packages (3.5.1) Collecting matplotlib<3.7 Downloading matplotlib-3.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.8 kB) Collecting seaborn Downloading seaborn-0.13.2-py3-none-any.whl.metadata (5.4 kB) Collecting shapely Downloading shapely-2.0.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.0 kB) Collecting svg.path Downloading svg.path-6.3-py2.py3-none-any.whl.metadata (13 kB) Collecting dxfgrabber Downloading dxfgrabber-1.0.1-py2.py3-none-any.whl.metadata (7.5 kB) Collecting cartopy Downloading Cartopy-0.23.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.0 kB) Collecting geopandas Downloading geopandas-0.14.3-py3-none-any.whl.metadata (1.5 kB) Collecting descartes Downloading descartes-1.1.0-py3-none-any.whl.metadata (2.4 kB) Requirement already satisfied: lxml in /usr/lib/python3/dist-packages (4.8.0) Collecting lxml Downloading lxml-5.2.1-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (3.4 kB) Collecting contourpy>=1.0.1 (from matplotlib<3.7) Downloading contourpy-1.2.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.8 kB) Requirement already satisfied: cycler>=0.10 in /usr/lib/python3/dist-packages (from matplotlib<3.7) (0.11.0) Requirement already satisfied: fonttools>=4.22.0 in /usr/lib/python3/dist-packages (from matplotlib<3.7) (4.29.1) Requirement already satisfied: kiwisolver>=1.0.1 in /usr/lib/python3/dist-packages (from matplotlib<3.7) (1.3.2) Requirement already satisfied: numpy>=1.19 in ./.local/lib/python3.10/site-packages (from matplotlib<3.7) (1.26.4) Requirement already satisfied: packaging>=20.0 in 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0:00:00 Collecting pandas>=1.2 (from seaborn) Downloading pandas-2.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) Requirement already satisfied: attrs>=19.2.0 in /usr/lib/python3/dist-packages (from fiona>=1.8.21->geopandas) (21.2.0) Collecting certifi (from fiona>=1.8.21->geopandas) Downloading certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB) Collecting click~=8.0 (from fiona>=1.8.21->geopandas) Downloading click-8.1.7-py3-none-any.whl.metadata (3.0 kB) Collecting click-plugins>=1.0 (from fiona>=1.8.21->geopandas) Downloading click_plugins-1.1.1-py2.py3-none-any.whl.metadata (6.4 kB) Collecting cligj>=0.5 (from fiona>=1.8.21->geopandas) Downloading cligj-0.7.2-py3-none-any.whl.metadata (5.0 kB) Requirement already satisfied: six in /usr/lib/python3/dist-packages (from fiona>=1.8.21->geopandas) (1.16.0) Collecting python-dateutil>=2.7 (from matplotlib<3.7) Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Requirement already satisfied: pytz>=2020.1 in /usr/lib/python3/dist-packages (from pandas>=1.2->seaborn) (2022.1) Collecting tzdata>=2022.7 (from pandas>=1.2->seaborn) Downloading tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) Downloading matplotlib-3.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.8/11.8 MB 194.2 MB/s eta 0:00:00 Downloading seaborn-0.13.2-py3-none-any.whl (294 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 294.9/294.9 kB 123.5 MB/s eta 0:00:00 Downloading shapely-2.0.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.5/2.5 MB 187.5 MB/s eta 0:00:00 Downloading svg.path-6.3-py2.py3-none-any.whl (16 kB) Downloading dxfgrabber-1.0.1-py2.py3-none-any.whl (34 kB) Downloading Cartopy-0.23.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.6/11.6 MB 206.0 MB/s eta 0:00:00 Downloading geopandas-0.14.3-py3-none-any.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 194.9 MB/s eta 0:00:00 Downloading descartes-1.1.0-py3-none-any.whl (5.8 kB) Downloading lxml-5.2.1-cp310-cp310-manylinux_2_28_x86_64.whl (5.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.0/5.0 MB 157.4 MB/s eta 0:00:00 Downloading contourpy-1.2.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (305 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 305.2/305.2 kB 137.3 MB/s eta 0:00:00 Downloading fiona-1.9.6-cp310-cp310-manylinux2014_x86_64.whl (15.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 15.7/15.7 MB 77.4 MB/s eta 0:00:00 Downloading pandas-2.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.0/13.0 MB 89.0 MB/s eta 0:00:00 Downloading pyproj-3.6.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.3/8.3 MB 220.7 MB/s eta 0:00:00 Downloading pyshp-2.3.1-py2.py3-none-any.whl (46 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 46.5/46.5 kB 28.5 MB/s eta 0:00:00 Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 229.9/229.9 kB 85.1 MB/s eta 0:00:00 Downloading click-8.1.7-py3-none-any.whl (97 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 97.9/97.9 kB 52.8 MB/s eta 0:00:00 Downloading click_plugins-1.1.1-py2.py3-none-any.whl (7.5 kB) Downloading cligj-0.7.2-py3-none-any.whl (7.1 kB) Downloading tzdata-2024.1-py2.py3-none-any.whl (345 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 345.4/345.4 kB 118.1 MB/s eta 0:00:00 Downloading certifi-2024.2.2-py3-none-any.whl (163 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 163.8/163.8 kB 86.6 MB/s eta 0:00:00 Installing collected packages: dxfgrabber, tzdata, svg.path, shapely, python-dateutil, pyshp, lxml, contourpy, click, certifi, pyproj, pandas, matplotlib, cligj, click-plugins, seaborn, fiona, descartes, cartopy, geopandas WARNING: The script pyproj is installed in '/home/build/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. WARNING: The script fio is installed in '/home/build/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. WARNING: The script cartopy_feature_download is installed in '/home/build/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. Successfully installed cartopy-0.23.0 certifi-2024.2.2 click-8.1.7 click-plugins-1.1.1 cligj-0.7.2 contourpy-1.2.1 descartes-1.1.0 dxfgrabber-1.0.1 fiona-1.9.6 geopandas-0.14.3 lxml-5.2.1 matplotlib-3.6.3 pandas-2.2.2 pyproj-3.6.1 pyshp-2.3.1 python-dateutil-2.9.0.post0 seaborn-0.13.2 shapely-2.0.4 svg.path-6.3 tzdata-2024.1 + pip install --upgrade pytest pytest-mpi cov-core coverage 'coveralls[yaml]' Defaulting to user installation because normal site-packages is not writeable Requirement already satisfied: pytest in /usr/lib/python3/dist-packages (6.2.5) Collecting pytest Downloading pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB) Collecting pytest-mpi Downloading pytest_mpi-0.6-py2.py3-none-any.whl.metadata (1.7 kB) Collecting cov-core Downloading cov-core-1.15.0.tar.gz (5.9 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting coverage Downloading coverage-7.5.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.2 kB) Collecting coveralls[yaml] Downloading coveralls-3.3.1-py2.py3-none-any.whl.metadata (5.0 kB) Requirement already satisfied: iniconfig in /usr/lib/python3/dist-packages (from pytest) (1.1.1) Requirement already satisfied: packaging in /usr/lib/python3/dist-packages (from pytest) (21.3) Collecting pluggy<2.0,>=1.4 (from pytest) Downloading pluggy-1.5.0-py3-none-any.whl.metadata (4.8 kB) Collecting exceptiongroup>=1.0.0rc8 (from pytest) Downloading exceptiongroup-1.2.1-py3-none-any.whl.metadata (6.6 kB) Collecting tomli>=1 (from pytest) Downloading tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB) Collecting coverage Downloading coverage-6.5.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.8 kB) Collecting docopt>=0.6.1 (from coveralls[yaml]) Downloading docopt-0.6.2.tar.gz (25 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting requests>=1.0.0 (from coveralls[yaml]) Downloading requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) Requirement already satisfied: PyYAML>=3.10 in /usr/lib/python3/dist-packages (from coveralls[yaml]) (5.4.1) Collecting charset-normalizer<4,>=2 (from requests>=1.0.0->coveralls[yaml]) Downloading charset_normalizer-3.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) Collecting idna<4,>=2.5 (from requests>=1.0.0->coveralls[yaml]) Downloading idna-3.7-py3-none-any.whl.metadata (9.9 kB) Collecting urllib3<3,>=1.21.1 (from requests>=1.0.0->coveralls[yaml]) Downloading urllib3-2.2.1-py3-none-any.whl.metadata (6.4 kB) Requirement already satisfied: certifi>=2017.4.17 in ./.local/lib/python3.10/site-packages (from requests>=1.0.0->coveralls[yaml]) (2024.2.2) Downloading pytest-8.1.1-py3-none-any.whl (337 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 337.4/337.4 kB 76.8 MB/s eta 0:00:00 Downloading pytest_mpi-0.6-py2.py3-none-any.whl (5.9 kB) Downloading coverage-6.5.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (213 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 213.3/213.3 kB 93.7 MB/s eta 0:00:00 Downloading exceptiongroup-1.2.1-py3-none-any.whl (16 kB) Downloading pluggy-1.5.0-py3-none-any.whl (20 kB) Downloading requests-2.31.0-py3-none-any.whl (62 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.6/62.6 kB 35.1 MB/s eta 0:00:00 Downloading tomli-2.0.1-py3-none-any.whl (12 kB) Downloading coveralls-3.3.1-py2.py3-none-any.whl (14 kB) Downloading charset_normalizer-3.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 142.1/142.1 kB 72.2 MB/s eta 0:00:00 Downloading idna-3.7-py3-none-any.whl (66 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 66.8/66.8 kB 36.7 MB/s eta 0:00:00 Downloading urllib3-2.2.1-py3-none-any.whl (121 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 121.1/121.1 kB 57.8 MB/s eta 0:00:00 Building wheels for collected packages: cov-core, docopt Building wheel for cov-core (setup.py): started Building wheel for cov-core (setup.py): finished with status 'done' Created wheel for cov-core: filename=cov_core-1.15.0-py3-none-any.whl size=6011 sha256=3a05599a6902f8bf39dc62a14a1610fc8b7c07234f68d8f67a2f6e6eb3a7547c Stored in directory: /home/build/.cache/pip/wheels/80/73/f2/6e7f18d4d52855e20db9463f7a23679627c90d9e0c46fb9046 Building wheel for docopt (setup.py): started Building wheel for docopt (setup.py): finished with status 'done' Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13706 sha256=e35cbfe12cddb21ef8fa79c14ad25b581db7c7eee244e4e09a82cc03f9b6fa02 Stored in directory: /home/build/.cache/pip/wheels/fc/ab/d4/5da2067ac95b36618c629a5f93f809425700506f72c9732fac Successfully built cov-core docopt Installing collected packages: docopt, urllib3, tomli, pluggy, idna, exceptiongroup, coverage, charset-normalizer, requests, pytest, cov-core, pytest-mpi, coveralls WARNING: The scripts coverage, coverage-3.10 and coverage3 are installed in '/home/build/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. WARNING: The script normalizer is installed in '/home/build/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. WARNING: The scripts py.test and pytest are installed in '/home/build/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. WARNING: The script coveralls is installed in '/home/build/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. Successfully installed charset-normalizer-3.3.2 cov-core-1.15.0 coverage-6.5.0 coveralls-3.3.1 docopt-0.6.2 exceptiongroup-1.2.1 idna-3.7 pluggy-1.5.0 pytest-8.1.1 pytest-mpi-0.6 requests-2.31.0 tomli-2.0.1 urllib3-2.2.1 + mv .coveralls.yml NNGT/.coveralls.yml + cd NNGT + pip install . Defaulting to user installation because normal site-packages is not writeable Processing /home/build/NNGT Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: cython in /home/build/.local/lib/python3.10/site-packages (from NNGT==2.7.3) (3.0.10) Collecting platformdirs (from NNGT==2.7.3) Downloading platformdirs-4.2.1-py3-none-any.whl.metadata (11 kB) Requirement already satisfied: numpy>=1.17 in /home/build/.local/lib/python3.10/site-packages (from NNGT==2.7.3) (1.26.4) Requirement already satisfied: scipy>=0.11 in /home/build/.local/lib/python3.10/site-packages (from NNGT==2.7.3) (1.13.0) Downloading platformdirs-4.2.1-py3-none-any.whl (17 kB) Building wheels for collected packages: NNGT Building wheel for NNGT (pyproject.toml): started Building wheel for NNGT (pyproject.toml): finished with status 'done' Created wheel for NNGT: filename=NNGT-2.7.3-cp310-cp310-linux_x86_64.whl size=1625766 sha256=ac38341dba14c28dd5ab97db0c81aa5a36f4b459e1fb977876d2ea4774adc659 Stored in directory: /tmp/pip-ephem-wheel-cache-e7jdqm4e/wheels/92/fa/40/bf3cd25b985bea2c1c5a04b1b799a3c432eded83a10407205a Successfully built NNGT Installing collected packages: platformdirs, NNGT Successfully installed NNGT-2.7.3 platformdirs-4.2.1 + echo 'export PATH=/home/build/.local/bin:$PATH' |
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+ cd NNGT
+ GL=all
+ coverage run -p -m pytest testing/library_compatibility.py
============================= test session starts ==============================
platform linux -- Python 3.10.12, pytest-8.1.1, pluggy-1.5.0
rootdir: /home/build/NNGT
configfile: pyproject.toml
plugins: mpi-0.6
collected 11 items
testing/library_compatibility.py ........... [100%]
=============================== warnings summary ===============================
../../../usr/lib/python3/dist-packages/pythran/config.py:8
/usr/lib/python3/dist-packages/pythran/config.py:8: DeprecationWarning:
`numpy.distutils` is deprecated since NumPy 1.23.0, as a result
of the deprecation of `distutils` itself. It will be removed for
Python >= 3.12. For older Python versions it will remain present.
It is recommended to use `setuptools < 60.0` for those Python versions.
For more details, see:
https://numpy.org/devdocs/reference/distutils_status_migration.html
import numpy.distutils.system_info as numpy_sys
../.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:67
/home/build/.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:67: DeprecationWarning: msvccompiler is deprecated and slated to be removed in the future. Please discontinue use or file an issue with pypa/distutils describing your use case.
warnings.warn(
../../../usr/lib/python3/dist-packages/pythran/tables.py:4520
/usr/lib/python3/dist-packages/pythran/tables.py:4520: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.
if not hasattr(numpy, method):
../../../usr/lib/python3/dist-packages/pythran/tables.py:4553
/usr/lib/python3/dist-packages/pythran/tables.py:4553: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar.
obj = getattr(themodule, elem)
../.local/lib/python3.10/site-packages/setuptools/sandbox.py:14
/home/build/.local/lib/python3.10/site-packages/setuptools/sandbox.py:14: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
import pkg_resources
../.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2832
/home/build/.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2832: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group, newer
testing/library_compatibility.py::test_binary_shortest_paths
/home/build/NNGT/nngt/analysis/ig_functions.py:351: RuntimeWarning: Couldn't reach some vertices at src/paths/unweighted.c:444
path = graph.get_shortest_paths(source, target, mode="out", weights=w)[0]
testing/library_compatibility.py::test_weighted_shortest_paths
/home/build/NNGT/nngt/analysis/ig_functions.py:351: RuntimeWarning: Couldn't reach some vertices. at src/paths/dijkstra.c:534
path = graph.get_shortest_paths(source, target, mode="out", weights=w)[0]
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================= 11 passed, 12 warnings in 12.97s =======================
+ GL=gt
+ coverage run -p -m pytest testing
============================= test session starts ==============================
platform linux -- Python 3.10.12, pytest-8.1.1, pluggy-1.5.0
rootdir: /home/build/NNGT
configfile: pyproject.toml
plugins: mpi-0.6
collected 91 items
testing/test_analysis.py .......... [ 10%]
testing/test_attributes.py ........... [ 23%]
testing/test_basics.py ............. [ 37%]
testing/test_connect_group_type.py ... [ 40%]
testing/test_examples.py sss [ 43%]
testing/test_gallery.py .. [ 46%]
testing/test_generation.py . [ 47%]
testing/test_generation2.py ...s....... [ 59%]
testing/test_graphclasses.py .... [ 63%]
testing/test_group_pop.py ..... [ 69%]
testing/test_io.py ........ [ 78%]
testing/test_mpi.py s [ 79%]
testing/test_nest.py ss [ 81%]
testing/test_plots.py ....s... [ 90%]
testing/test_random.py .. [ 92%]
testing/test_rewire.py ..... [ 97%]
testing/test_weights.py .. [100%]
=============================== warnings summary ===============================
../../../usr/lib/python3/dist-packages/pythran/config.py:8
/usr/lib/python3/dist-packages/pythran/config.py:8: DeprecationWarning:
`numpy.distutils` is deprecated since NumPy 1.23.0, as a result
of the deprecation of `distutils` itself. It will be removed for
Python >= 3.12. For older Python versions it will remain present.
It is recommended to use `setuptools < 60.0` for those Python versions.
For more details, see:
https://numpy.org/devdocs/reference/distutils_status_migration.html
import numpy.distutils.system_info as numpy_sys
../.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:67
/home/build/.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:67: DeprecationWarning: msvccompiler is deprecated and slated to be removed in the future. Please discontinue use or file an issue with pypa/distutils describing your use case.
warnings.warn(
../../../usr/lib/python3/dist-packages/pythran/tables.py:4520
/usr/lib/python3/dist-packages/pythran/tables.py:4520: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.
if not hasattr(numpy, method):
../../../usr/lib/python3/dist-packages/pythran/tables.py:4553
/usr/lib/python3/dist-packages/pythran/tables.py:4553: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar.
obj = getattr(themodule, elem)
../.local/lib/python3.10/site-packages/setuptools/sandbox.py:14
/home/build/.local/lib/python3.10/site-packages/setuptools/sandbox.py:14: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
import pkg_resources
../.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2832
/home/build/.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2832: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group, newer
testing/test_plots.py::test_draw_network_options
/home/build/.local/lib/python3.10/site-packages/scipy/sparse/_index.py:151: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_arrayXarray(i, j, x)
testing/test_plots.py::test_hive_plot
/home/build/NNGT/nngt/plot/plt_networks.py:975: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`.
_, axis = plt.subplots()
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================= 83 passed, 8 skipped, 12 warnings in 52.52s ==================
+ GL=nx
+ coverage run -p -m pytest testing
============================= test session starts ==============================
platform linux -- Python 3.10.12, pytest-8.1.1, pluggy-1.5.0
rootdir: /home/build/NNGT
configfile: pyproject.toml
plugins: mpi-0.6
collected 91 items
testing/test_analysis.py .......... [ 10%]
testing/test_attributes.py ........... [ 23%]
testing/test_basics.py ............. [ 37%]
testing/test_connect_group_type.py ... [ 40%]
testing/test_examples.py sss [ 43%]
testing/test_gallery.py .. [ 46%]
testing/test_generation.py . [ 47%]
testing/test_generation2.py ...s....... [ 59%]
testing/test_graphclasses.py .... [ 63%]
testing/test_group_pop.py ..... [ 69%]
testing/test_io.py ........ [ 78%]
testing/test_mpi.py s [ 79%]
testing/test_nest.py ss [ 81%]
testing/test_plots.py ........ [ 90%]
testing/test_random.py .. [ 92%]
testing/test_rewire.py ..... [ 97%]
testing/test_weights.py .. [100%]
=============================== warnings summary ===============================
../../../usr/lib/python3/dist-packages/pythran/config.py:8
/usr/lib/python3/dist-packages/pythran/config.py:8: DeprecationWarning:
`numpy.distutils` is deprecated since NumPy 1.23.0, as a result
of the deprecation of `distutils` itself. It will be removed for
Python >= 3.12. For older Python versions it will remain present.
It is recommended to use `setuptools < 60.0` for those Python versions.
For more details, see:
https://numpy.org/devdocs/reference/distutils_status_migration.html
import numpy.distutils.system_info as numpy_sys
../.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:67
/home/build/.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:67: DeprecationWarning: msvccompiler is deprecated and slated to be removed in the future. Please discontinue use or file an issue with pypa/distutils describing your use case.
warnings.warn(
../../../usr/lib/python3/dist-packages/pythran/tables.py:4520
/usr/lib/python3/dist-packages/pythran/tables.py:4520: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.
if not hasattr(numpy, method):
../../../usr/lib/python3/dist-packages/pythran/tables.py:4553
/usr/lib/python3/dist-packages/pythran/tables.py:4553: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar.
obj = getattr(themodule, elem)
../.local/lib/python3.10/site-packages/setuptools/sandbox.py:14
/home/build/.local/lib/python3.10/site-packages/setuptools/sandbox.py:14: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
import pkg_resources
../.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2832
/home/build/.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2832: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group, newer
testing/test_basics.py::test_delete
/home/build/.local/lib/python3.10/site-packages/pandas/core/computation/expressions.py:21: UserWarning: Pandas requires version '2.8.4' or newer of 'numexpr' (version '2.8.1' currently installed).
from pandas.core.computation.check import NUMEXPR_INSTALLED
testing/test_basics.py::test_delete
/home/build/.local/lib/python3.10/site-packages/pandas/core/arrays/masked.py:60: UserWarning: Pandas requires version '1.3.6' or newer of 'bottleneck' (version '1.3.2' currently installed).
from pandas.core import (
testing/test_plots.py::test_draw_network_options
/home/build/.local/lib/python3.10/site-packages/scipy/sparse/_index.py:151: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_arrayXarray(i, j, x)
testing/test_plots.py::test_library_plot
/home/build/NNGT/nngt/plot/plt_networks.py:1247: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`.
fig, axis = plt.subplots(figsize=size_inches)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
============ 84 passed, 7 skipped, 14 warnings in 181.90s (0:03:01) ============
+ GL=ig
+ coverage run -p -m pytest testing
============================= test session starts ==============================
platform linux -- Python 3.10.12, pytest-8.1.1, pluggy-1.5.0
rootdir: /home/build/NNGT
configfile: pyproject.toml
plugins: mpi-0.6
collected 91 items
testing/test_analysis.py .......... [ 10%]
testing/test_attributes.py ........... [ 23%]
testing/test_basics.py ............. [ 37%]
testing/test_connect_group_type.py ... [ 40%]
testing/test_examples.py sss [ 43%]
testing/test_gallery.py .. [ 46%]
testing/test_generation.py . [ 47%]
testing/test_generation2.py ...s....... [ 59%]
testing/test_graphclasses.py .... [ 63%]
testing/test_group_pop.py ..... [ 69%]
testing/test_io.py ........ [ 78%]
testing/test_mpi.py s [ 79%]
testing/test_nest.py ss [ 81%]
testing/test_plots.py ........ [ 90%]
testing/test_random.py .. [ 92%]
testing/test_rewire.py ..... [ 97%]
testing/test_weights.py .. [100%]
=============================== warnings summary ===============================
../../../usr/lib/python3/dist-packages/pythran/config.py:8
/usr/lib/python3/dist-packages/pythran/config.py:8: DeprecationWarning:
`numpy.distutils` is deprecated since NumPy 1.23.0, as a result
of the deprecation of `distutils` itself. It will be removed for
Python >= 3.12. For older Python versions it will remain present.
It is recommended to use `setuptools < 60.0` for those Python versions.
For more details, see:
https://numpy.org/devdocs/reference/distutils_status_migration.html
import numpy.distutils.system_info as numpy_sys
../.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:67
/home/build/.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:67: DeprecationWarning: msvccompiler is deprecated and slated to be removed in the future. Please discontinue use or file an issue with pypa/distutils describing your use case.
warnings.warn(
../../../usr/lib/python3/dist-packages/pythran/tables.py:4520
/usr/lib/python3/dist-packages/pythran/tables.py:4520: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.
if not hasattr(numpy, method):
../../../usr/lib/python3/dist-packages/pythran/tables.py:4553
/usr/lib/python3/dist-packages/pythran/tables.py:4553: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar.
obj = getattr(themodule, elem)
../.local/lib/python3.10/site-packages/setuptools/sandbox.py:14
/home/build/.local/lib/python3.10/site-packages/setuptools/sandbox.py:14: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
import pkg_resources
../.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2832
/home/build/.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2832: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group, newer
testing/test_plots.py::test_draw_network_options
/home/build/.local/lib/python3.10/site-packages/scipy/sparse/_index.py:151: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_arrayXarray(i, j, x)
testing/test_plots.py::test_library_plot
/home/build/NNGT/nngt/plot/plt_networks.py:1247: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`.
fig, axis = plt.subplots(figsize=size_inches)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================= 84 passed, 7 skipped, 12 warnings in 38.93s ==================
+ GL=nngt
+ coverage run -p -m pytest testing
============================= test session starts ==============================
platform linux -- Python 3.10.12, pytest-8.1.1, pluggy-1.5.0
rootdir: /home/build/NNGT
configfile: pyproject.toml
plugins: mpi-0.6
collected 91 items
testing/test_analysis.py ........s. [ 10%]
testing/test_attributes.py ........... [ 23%]
testing/test_basics.py ............. [ 37%]
testing/test_connect_group_type.py ... [ 40%]
testing/test_examples.py sss [ 43%]
testing/test_gallery.py .. [ 46%]
testing/test_generation.py . [ 47%]
testing/test_generation2.py ...s....... [ 59%]
testing/test_graphclasses.py .... [ 63%]
testing/test_group_pop.py ..... [ 69%]
testing/test_io.py ........ [ 78%]
testing/test_mpi.py s [ 79%]
testing/test_nest.py ss [ 81%]
testing/test_plots.py .....s.. [ 90%]
testing/test_random.py .. [ 92%]
testing/test_rewire.py ..... [ 97%]
testing/test_weights.py .. [100%]
=============================== warnings summary ===============================
../../../usr/lib/python3/dist-packages/pythran/config.py:8
/usr/lib/python3/dist-packages/pythran/config.py:8: DeprecationWarning:
`numpy.distutils` is deprecated since NumPy 1.23.0, as a result
of the deprecation of `distutils` itself. It will be removed for
Python >= 3.12. For older Python versions it will remain present.
It is recommended to use `setuptools < 60.0` for those Python versions.
For more details, see:
https://numpy.org/devdocs/reference/distutils_status_migration.html
import numpy.distutils.system_info as numpy_sys
../.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:67
/home/build/.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:67: DeprecationWarning: msvccompiler is deprecated and slated to be removed in the future. Please discontinue use or file an issue with pypa/distutils describing your use case.
warnings.warn(
../../../usr/lib/python3/dist-packages/pythran/tables.py:4520
/usr/lib/python3/dist-packages/pythran/tables.py:4520: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.
if not hasattr(numpy, method):
../../../usr/lib/python3/dist-packages/pythran/tables.py:4553
/usr/lib/python3/dist-packages/pythran/tables.py:4553: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar.
obj = getattr(themodule, elem)
../.local/lib/python3.10/site-packages/setuptools/sandbox.py:14
/home/build/.local/lib/python3.10/site-packages/setuptools/sandbox.py:14: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
import pkg_resources
../.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2832
/home/build/.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2832: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group, newer
testing/test_plots.py::test_draw_network_options
/home/build/.local/lib/python3.10/site-packages/scipy/sparse/_index.py:151: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_arrayXarray(i, j, x)
testing/test_plots.py::test_library_plot
/home/build/NNGT/nngt/plot/plt_networks.py:1247: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`.
fig, axis = plt.subplots(figsize=size_inches)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================= 82 passed, 9 skipped, 12 warnings in 34.63s ==================
+ GL=ig
+ OMP=2
+ PYNEST_QUIET=1
+ coverage run -p -m pytest testing
============================= test session starts ==============================
platform linux -- Python 3.10.12, pytest-8.1.1, pluggy-1.5.0
rootdir: /home/build/NNGT
configfile: pyproject.toml
plugins: mpi-0.6
collected 91 items
testing/test_analysis.py .......... [ 10%]
testing/test_attributes.py ........... [ 23%]
testing/test_basics.py ............. [ 37%]
testing/test_connect_group_type.py ... [ 40%]
testing/test_examples.py ... [ 43%]
testing/test_gallery.py .. [ 46%]
testing/test_generation.py . [ 47%]
testing/test_generation2.py ...s....... [ 59%]
testing/test_graphclasses.py .... [ 63%]
testing/test_group_pop.py ..... [ 69%]
testing/test_io.py ........ [ 78%]
testing/test_mpi.py s [ 79%]
testing/test_nest.py ss [ 81%]
testing/test_plots.py ........ [ 90%]
testing/test_random.py .. [ 92%]
testing/test_rewire.py ..... [ 97%]
testing/test_weights.py .. [100%]
=============================== warnings summary ===============================
../../../usr/lib/python3/dist-packages/pythran/config.py:8
/usr/lib/python3/dist-packages/pythran/config.py:8: DeprecationWarning:
`numpy.distutils` is deprecated since NumPy 1.23.0, as a result
of the deprecation of `distutils` itself. It will be removed for
Python >= 3.12. For older Python versions it will remain present.
It is recommended to use `setuptools < 60.0` for those Python versions.
For more details, see:
https://numpy.org/devdocs/reference/distutils_status_migration.html
import numpy.distutils.system_info as numpy_sys
../.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:67
/home/build/.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:67: DeprecationWarning: msvccompiler is deprecated and slated to be removed in the future. Please discontinue use or file an issue with pypa/distutils describing your use case.
warnings.warn(
../../../usr/lib/python3/dist-packages/pythran/tables.py:4520
/usr/lib/python3/dist-packages/pythran/tables.py:4520: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.
if not hasattr(numpy, method):
../../../usr/lib/python3/dist-packages/pythran/tables.py:4553
/usr/lib/python3/dist-packages/pythran/tables.py:4553: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar.
obj = getattr(themodule, elem)
../.local/lib/python3.10/site-packages/setuptools/sandbox.py:14
/home/build/.local/lib/python3.10/site-packages/setuptools/sandbox.py:14: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
import pkg_resources
../.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2832
/home/build/.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2832: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group, newer
testing/test_examples.py::test_example_graph_struct
/home/build/.local/lib/python3.10/site-packages/pandas/core/computation/expressions.py:21: UserWarning: Pandas requires version '2.8.4' or newer of 'numexpr' (version '2.8.1' currently installed).
from pandas.core.computation.check import NUMEXPR_INSTALLED
testing/test_examples.py::test_example_graph_struct
/home/build/.local/lib/python3.10/site-packages/pandas/core/arrays/masked.py:60: UserWarning: Pandas requires version '1.3.6' or newer of 'bottleneck' (version '1.3.2' currently installed).
from pandas.core import (
testing/test_examples.py::test_example_graph_struct
/home/build/.local/lib/python3.10/site-packages/cartopy/io/__init__.py:241: DownloadWarning: Downloading: https://naturalearth.s3.amazonaws.com/110m_cultural/ne_110m_admin_0_countries.zip
warnings.warn(f'Downloading: {url}', DownloadWarning)
testing/test_examples.py::test_example_graph_struct
/home/build/.local/lib/python3.10/site-packages/cartopy/io/__init__.py:241: DownloadWarning: Downloading: https://naturalearth.s3.amazonaws.com/50m_cultural/ne_50m_admin_0_countries.zip
warnings.warn(f'Downloading: {url}', DownloadWarning)
testing/test_examples.py::test_example_graph_struct
/home/build/.local/lib/python3.10/site-packages/cartopy/io/__init__.py:241: DownloadWarning: Downloading: https://naturalearth.s3.amazonaws.com/10m_cultural/ne_10m_admin_0_map_units.zip
warnings.warn(f'Downloading: {url}', DownloadWarning)
testing/test_examples.py::test_example_graph_struct
/home/build/.local/lib/python3.10/site-packages/cartopy/io/__init__.py:241: DownloadWarning: Downloading: https://naturalearth.s3.amazonaws.com/10m_cultural/ne_10m_populated_places_simple.zip
warnings.warn(f'Downloading: {url}', DownloadWarning)
testing/test_examples.py::test_example_graph_struct
/home/build/.local/lib/python3.10/site-packages/matplotlib/collections.py:967: RuntimeWarning: invalid value encountered in sqrt
scale = np.sqrt(self._sizes) * dpi / 72.0 * self._factor
testing/test_examples.py::test_examples
/home/build/NNGT/nngt/plot/plt_networks.py:1247: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`.
fig, axis = plt.subplots(figsize=size_inches)
testing/test_plots.py::test_draw_network_options
/home/build/.local/lib/python3.10/site-packages/scipy/sparse/_index.py:151: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_arrayXarray(i, j, x)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
============ 87 passed, 4 skipped, 19 warnings in 107.09s (0:01:47) ============
+ GL=gt
+ OMP=0
+ MPI=1
+ mpirun -n 2 coverage run -p -m pytest --with-mpi testing
============================= test session starts ==============================
platform linux -- Python 3.10.12, pytest-8.1.1, pluggy-1.5.0
============================= test session starts ==============================
platform linux -- Python 3.10.12, pytest-8.1.1, pluggy-1.5.0
rootdir: /home/build/NNGT
configfile: pyproject.toml
plugins: mpi-0.6
collecting ... rootdir: /home/build/NNGT
configfile: pyproject.toml
plugins: mpi-0.6
collecting ...
collecting 0 items
collecting 0 items
collected 91 items
collected 91 items
testing/test_analysis.py
testing/test_analysis.py sssssssssssssssss [ 10%]
testing/test_attributes.py sssss [ 10%]
testing/test_attributes.py s.s......sssss [ 23%]
testing/test_basics.py .sssss [ 23%]
testing/test_basics.py ..ssssss.s.s.....ss.ss.s. [ 37%]
testing/test_connect_group_type.py ss [ 37%]
testing/test_connect_group_type.py sss. [ 40%]
testing/test_examples.py sss [ 43%]
testing/test_gallery.py ss [ 46%]
testing/test_generation.py s [ 47%]
testing/test_generation2.py sss. [ 40%]
testing/test_examples.py sss [ 43%]
testing/test_gallery.py ss [ 46%]
testing/test_generation.py s [ 47%]
testing/test_generation2.py sss..sssssssssssss [ 59%]
testing/test_graphclasses.py ss [ 59%]
testing/test_graphclasses.py sssss [ 63%]
testing/test_group_pop.py .ss. [ 63%]
testing/test_group_pop.py ....s [ 69%]
testing/test_io.py .s.sss [ 69%]
testing/test_io.py ssssssss [ 78%]
testing/test_mpi.py sssss [ 78%]
testing/test_mpi.py . [ 79%]
testing/test_nest.py ss [ 81%]
testing/test_plots.py ssssssss [ 90%]
testing/test_random.py . [ 79%]
testing/test_nest.py ss [ 81%]
testing/test_plots.py ssssssss [ 90%]
testing/test_random.py .... [ 92%]
[ 92%]testing/test_rewire.py
testing/test_rewire.py sssssssss [ 97%]
testing/test_weights.py ss [ 97%]
testing/test_weights.py s. [100%]
=============================== warnings summary ===============================
../../../usr/lib/python3/dist-packages/pythran/config.py:8
/usr/lib/python3/dist-packages/pythran/config.py:8: DeprecationWarning:
`numpy.distutils` is deprecated since NumPy 1.23.0, as a result
of the deprecation of `distutils` itself. It will be removed for
Python >= 3.12. For older Python versions it will remain present.
It is recommended to use `setuptools < 60.0` for those Python versions.
For more details, see:
https://numpy.org/devdocs/reference/distutils_status_migration.html
import numpy.distutils.system_info as numpy_sys
../.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:67
/home/build/.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:67: DeprecationWarning: msvccompiler is deprecated and slated to be removed in the future. Please discontinue use or file an issue with pypa/distutils describing your use case.
warnings.warn(
../../../usr/lib/python3/dist-packages/pythran/tables.py:4520
/usr/lib/python3/dist-packages/pythran/tables.py:4520: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.
if not hasattr(numpy, method):
../../../usr/lib/python3/dist-packages/pythran/tables.py:4553
/usr/lib/python3/dist-packages/pythran/tables.py:4553: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar.
obj = getattr(themodule, elem)
../.local/lib/python3.10/site-packages/setuptools/sandbox.py:14
/home/build/.local/lib/python3.10/site-packages/setuptools/sandbox.py:14: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
import pkg_resources
../.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2832
/home/build/.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2832: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group, newer
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=============================== MPI Information ================================
rank: 0
size: 2
MPI version: 3.1
MPI library version: Open MPI v4.1.2, package: Debian OpenMPI, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021
MPI vendor: Open MPI 4.1.2
mpi4py rc:
mpi4py config:
mpicc: /usr/bin/mpicc
mpicxx: /usr/bin/mpicxx
mpifort: /usr/bin/mpifort
mpif90: /usr/bin/mpif90
mpif77: /usr/bin/mpif77
================= 20 passed, 71 skipped, 10 warnings in 15.29s =================
. [100%]
=============================== warnings summary ===============================
../../../usr/lib/python3/dist-packages/pythran/config.py:8
/usr/lib/python3/dist-packages/pythran/config.py:8: DeprecationWarning:
`numpy.distutils` is deprecated since NumPy 1.23.0, as a result
of the deprecation of `distutils` itself. It will be removed for
Python >= 3.12. For older Python versions it will remain present.
It is recommended to use `setuptools < 60.0` for those Python versions.
For more details, see:
https://numpy.org/devdocs/reference/distutils_status_migration.html
import numpy.distutils.system_info as numpy_sys
../.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:67
/home/build/.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:67: DeprecationWarning: msvccompiler is deprecated and slated to be removed in the future. Please discontinue use or file an issue with pypa/distutils describing your use case.
warnings.warn(
../../../usr/lib/python3/dist-packages/pythran/tables.py:4520
/usr/lib/python3/dist-packages/pythran/tables.py:4520: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.
if not hasattr(numpy, method):
../../../usr/lib/python3/dist-packages/pythran/tables.py:4553
/usr/lib/python3/dist-packages/pythran/tables.py:4553: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar.
obj = getattr(themodule, elem)
../.local/lib/python3.10/site-packages/setuptools/sandbox.py:14
/home/build/.local/lib/python3.10/site-packages/setuptools/sandbox.py:14: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
import pkg_resources
../.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2832
/home/build/.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2832: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
/home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
from distutils.dep_util import newer_group, newer
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=============================== MPI Information ================================
rank: 1
size: 2
MPI version: 3.1
MPI library version: Open MPI v4.1.2, package: Debian OpenMPI, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021
MPI vendor: Open MPI 4.1.2
mpi4py rc:
mpi4py config:
mpicc: /usr/bin/mpicc
mpicxx: /usr/bin/mpicxx
mpifort: /usr/bin/mpifort
mpif90: /usr/bin/mpif90
mpif77: /usr/bin/mpif77
================= 20 passed, 71 skipped, 10 warnings in 15.30s =================
+ coverage combine
Combined data file .coverage.build.7570.748486
Combined data file .coverage.build.7721.795991
Combined data file .coverage.build.7599.075741
Combined data file .coverage.build.7527.326776
Combined data file .coverage.build.7659.307781
Combined data file .coverage.build.7687.826024
Combined data file .coverage.build.7722.996192
Combined data file .coverage.build.7631.488767
++ git show -s --pretty=%D HEAD
++ grep -v HEAD
++ tr -s ', /' '\n'
++ sed -n 2p
+ GIT_BRANCH=main
+ CI_NAME=git.sr.ht
+ CI_BUILD_NUMBER=1205551
+ CI_BUILD_URL=https://builds.sr.ht/~tfardet/job/1205551
+ CI_BRANCH=main
+ coveralls
Submitting coverage to coveralls.io...
Coverage submitted!
Job #1205551.1
https://coveralls.io/jobs/141174011
|
1 2 3 4 5 6 7 8 9 10 11 12 13 14 |
+ cd NNGT
++ git show -s --pretty=%D HEAD
++ sed -n 2p
++ grep -v HEAD
++ tr -s ', /' '\n'
+ GIT_BRANCH=main
+ set +x
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 123 100 63 100 60 101 96 --:--:-- --:--:-- --:--:-- 197
100 123 100 63 100 60 101 96 --:--:-- --:--:-- --:--:-- 197
{"build_triggered":true,"project":"nngt","versions":["latest"]} |