Improved corrections (metabolism), flow_fractions
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[#1196327] 2024/04/15 11:34:09 Booting image ubuntu/lts (default) on port 22651 [#1196327] 2024/04/15 11:34:09 Waiting for guest to settle [#1196327] 2024/04/15 11:34:17 Sending tasks [#1196327] 2024/04/15 11:34:19 Sending build environment [#1196327] 2024/04/15 11:34:20 Sending secrets [#1196327] 2024/04/15 11:34:20 Resolving secret 69332acb-b779-4bb2-ae8a-719f8e150ace [#1196327] 2024/04/15 11:34:20 Installing packages Warning: Permanently added '[localhost]:22651' (ED25519) to the list of known hosts. Hit:1 http://archive.ubuntu.com/ubuntu jammy InRelease Get:2 http://archive.ubuntu.com/ubuntu jammy-security InRelease [110 kB] Get:3 http://archive.ubuntu.com/ubuntu jammy-updates InRelease [119 kB] Hit:4 http://archive.ubuntu.com/ubuntu jammy-backports InRelease Get:5 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 Packages [1343 kB] Get:6 http://archive.ubuntu.com/ubuntu jammy-security/main Translation-en [237 kB] Get:7 http://archive.ubuntu.com/ubuntu jammy-security/restricted amd64 Packages [1670 kB] Get:8 http://archive.ubuntu.com/ubuntu jammy-security/restricted Translation-en [280 kB] Get:9 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 Packages [853 kB] Get:10 http://archive.ubuntu.com/ubuntu jammy-security/universe Translation-en [163 kB] Get:11 http://archive.ubuntu.com/ubuntu jammy-security/multiverse amd64 Packages [37.2 kB] Get:12 http://archive.ubuntu.com/ubuntu jammy-security/multiverse Translation-en [7588 B] Get:13 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 Packages [1562 kB] Get:14 http://archive.ubuntu.com/ubuntu jammy-updates/main Translation-en [297 kB] Get:15 http://archive.ubuntu.com/ubuntu jammy-updates/restricted amd64 Packages [1702 kB] Get:16 http://archive.ubuntu.com/ubuntu jammy-updates/restricted Translation-en [286 kB] Get:17 http://archive.ubuntu.com/ubuntu jammy-updates/universe amd64 Packages [1074 kB] Get:18 http://archive.ubuntu.com/ubuntu jammy-updates/universe Translation-en [245 kB] Get:19 http://archive.ubuntu.com/ubuntu jammy-updates/multiverse amd64 Packages [49.7 kB] Get:20 http://archive.ubuntu.com/ubuntu jammy-updates/multiverse Translation-en [12.1 kB] Fetched 10.0 MB in 2s (5363 kB/s) Reading package lists... Warning: Permanently added '[localhost]:22651' (ED25519) to the list of known hosts. Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: javascript-common libexpat1-dev libjs-jquery libjs-sphinxdoc libjs-underscore libpython3-dev libpython3.10 libpython3.10-dev python3-dev python3-distutils python3-lib2to3 python3-setuptools python3-wheel python3.10-dev zlib1g-dev Suggested packages: apache2 | lighttpd | httpd python-setuptools-doc The following NEW packages will be installed: javascript-common libexpat1-dev libjs-jquery libjs-sphinxdoc libjs-underscore libpython3-dev libpython3.10 libpython3.10-dev python3-dev python3-distutils python3-lib2to3 python3-pip python3-setuptools python3-wheel python3.10-dev zlib1g-dev 0 upgraded, 16 newly installed, 0 to remove and 13 not upgraded. Need to get 10.0 MB of archives. After this operation, 40.5 MB of additional disk space will be used. Get:1 http://archive.ubuntu.com/ubuntu jammy/main amd64 javascript-common all 11+nmu1 [5936 B] Get:2 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libexpat1-dev amd64 2.4.7-1ubuntu0.3 [147 kB] Get:3 http://archive.ubuntu.com/ubuntu jammy/main amd64 libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [321 kB] Get:4 http://archive.ubuntu.com/ubuntu jammy/main amd64 libjs-underscore all 1.13.2~dfsg-2 [118 kB] Get:5 http://archive.ubuntu.com/ubuntu jammy/main amd64 libjs-sphinxdoc all 4.3.2-1 [139 kB] Get:6 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libpython3.10 amd64 3.10.12-1~22.04.3 [1948 kB] Get:7 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu9.2 [164 kB] Get:8 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libpython3.10-dev amd64 3.10.12-1~22.04.3 [4762 kB] Get:9 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libpython3-dev amd64 3.10.6-1~22.04 [7166 B] Get:10 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3.10-dev amd64 3.10.12-1~22.04.3 [507 kB] Get:11 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-lib2to3 all 3.10.8-1~22.04 [77.6 kB] Get:12 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-distutils all 3.10.8-1~22.04 [139 kB] Get:13 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-dev amd64 3.10.6-1~22.04 [26.0 kB] Get:14 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-setuptools all 59.6.0-1.2ubuntu0.22.04.1 [339 kB] Get:15 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 python3-wheel all 0.37.1-2ubuntu0.22.04.1 [32.0 kB] Get:16 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 python3-pip all 22.0.2+dfsg-1ubuntu0.4 [1305 kB] Fetched 10.0 MB in 1s (8327 kB/s) Selecting previously unselected package javascript-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39101 files and directories currently installed.) Preparing to unpack .../00-javascript-common_11+nmu1_all.deb ... Unpacking javascript-common (11+nmu1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../01-libexpat1-dev_2.4.7-1ubuntu0.3_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.4.7-1ubuntu0.3) ... Selecting previously unselected package libjs-jquery. 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Setting up python3-wheel (0.37.1-2ubuntu0.22.04.1) ... Setting up libpython3.10-dev:amd64 (3.10.12-1~22.04.3) ... Setting up python3-pip (22.0.2+dfsg-1ubuntu0.4) ... Setting up libjs-sphinxdoc (4.3.2-1) ... Setting up python3.10-dev (3.10.12-1~22.04.3) ... Setting up libpython3-dev:amd64 (3.10.6-1~22.04) ... Setting up python3-dev (3.10.6-1~22.04) ... Processing triggers for libc-bin (2.35-0ubuntu3.6) ... [#1196327] 2024/04/15 11:34:26 Cloning repositories Cloning into 'OrgMatt'... + cd OrgMatt + git checkout -q 5fda53bca29e3b1a01043fe9a41699de36ed3e50 + cd OrgMatt + git submodule update --init --recursive [#1196327] 2024/04/15 11:34:27 Running task path [#1196327] 2024/04/15 11:34:28 Running task check [#1196327] 2024/04/15 11:34:31 Running task setup [#1196327] 2024/04/15 11:34:46 Running task test [#1196327] 2024/04/15 11:34:59 Running task doc |
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+ echo 'export PATH=$PATH:/home/build/.local/bin' |
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+ pip3 install reuse Defaulting to user installation because normal site-packages is not writeable Collecting reuse Downloading reuse-3.0.2.tar.gz (269 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 269.4/269.4 KB 15.5 MB/s eta 0:00:00 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting Jinja2<4.0.0,>=3.0.0 Downloading Jinja2-3.1.3-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.2/133.2 KB 48.0 MB/s eta 0:00:00 Collecting license-expression>=1.0 Downloading license_expression-30.3.0-py3-none-any.whl (108 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 108.9/108.9 KB 51.0 MB/s eta 0:00:00 Collecting python-debian!=0.1.45,!=0.1.46,!=0.1.47,<0.2.0,>=0.1.34 Downloading python_debian-0.1.49-py3-none-any.whl (132 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 132.5/132.5 KB 58.1 MB/s eta 0:00:00 Collecting binaryornot<0.5.0,>=0.4.4 Downloading binaryornot-0.4.4-py2.py3-none-any.whl (9.0 kB) Collecting boolean.py>=3.8 Downloading boolean.py-4.0-py3-none-any.whl (25 kB) Collecting chardet>=3.0.2 Downloading chardet-5.2.0-py3-none-any.whl (199 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 199.4/199.4 KB 58.4 MB/s eta 0:00:00 Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.1.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Building wheels for collected packages: reuse Building wheel for reuse (pyproject.toml): started Building wheel for reuse (pyproject.toml): finished with status 'done' Created wheel for reuse: filename=reuse-3.0.2-cp310-cp310-manylinux_2_35_x86_64.whl size=119657 sha256=91bebc3608eeea55875ac12fb9650ffa9738b8be4e8025014818adfddbb884c5 Stored in directory: /home/build/.cache/pip/wheels/2b/57/24/d43da4d2afa2378313e911ca8254dd24b3becb9e0ee2d57e0b Successfully built reuse Installing collected packages: boolean.py, MarkupSafe, license-expression, chardet, python-debian, Jinja2, binaryornot, reuse Successfully installed Jinja2-3.1.3 MarkupSafe-2.1.5 binaryornot-0.4.4 boolean.py-4.0 chardet-5.2.0 license-expression-30.3.0 python-debian-0.1.49 reuse-3.0.2 + cd OrgMatt + reuse lint # SUMMARY * Bad licenses: 0 * Deprecated licenses: 0 * Licenses without file extension: 0 * Missing licenses: 0 * Unused licenses: 0 * Used licenses: BSD-2-Clause, Python-2.0, CC-BY-SA-4.0, CC0-1.0, GPL-3.0-or-later, CC-BY-4.0 * Read errors: 0 * files with copyright information: 89 / 89 * files with license information: 89 / 89 Congratulations! Your project is compliant with version 3.0 of the REUSE Specification :-) |
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+ cd OrgMatt + pip3 install --upgrade pip pytest setuptools Defaulting to user installation because normal site-packages is not writeable Requirement already satisfied: pip in /usr/lib/python3/dist-packages (22.0.2) Collecting pip Downloading pip-24.0-py3-none-any.whl (2.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 54.1 MB/s eta 0:00:00 Collecting pytest Downloading pytest-8.1.1-py3-none-any.whl (337 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 337.4/337.4 KB 116.2 MB/s eta 0:00:00 Requirement already satisfied: setuptools in /usr/lib/python3/dist-packages (59.6.0) Collecting setuptools Downloading setuptools-69.5.1-py3-none-any.whl (894 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 894.6/894.6 KB 104.6 MB/s eta 0:00:00 Collecting iniconfig Downloading iniconfig-2.0.0-py3-none-any.whl (5.9 kB) Collecting tomli>=1 Downloading tomli-2.0.1-py3-none-any.whl (12 kB) Collecting exceptiongroup>=1.0.0rc8 Downloading exceptiongroup-1.2.0-py3-none-any.whl (16 kB) Collecting pluggy<2.0,>=1.4 Downloading pluggy-1.4.0-py3-none-any.whl (20 kB) Collecting packaging Downloading packaging-24.0-py3-none-any.whl (53 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 53.5/53.5 KB 45.5 MB/s eta 0:00:00 Installing collected packages: tomli, setuptools, pluggy, pip, packaging, iniconfig, exceptiongroup, pytest Successfully installed exceptiongroup-1.2.0 iniconfig-2.0.0 packaging-24.0 pip-24.0 pluggy-1.4.0 pytest-8.1.1 setuptools-69.5.1 tomli-2.0.1 + pip install -r requirements.txt Defaulting to user installation because normal site-packages is not writeable Collecting numpy>=1.20 (from -r requirements.txt (line 5)) Downloading numpy-1.26.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.0/61.0 kB 6.4 MB/s eta 0:00:00 Collecting scipy (from -r requirements.txt (line 6)) Downloading scipy-1.13.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.6/60.6 kB 32.9 MB/s eta 0:00:00 Collecting pandas (from -r requirements.txt (line 7)) Downloading pandas-2.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) Collecting pint>=0.19 (from -r requirements.txt (line 8)) Downloading Pint-0.23-py3-none-any.whl.metadata (8.1 kB) Collecting openscm-units (from -r requirements.txt (line 9)) Downloading openscm_units-0.5.4-py3-none-any.whl.metadata (3.9 kB) Collecting seaborn (from -r requirements.txt (line 10)) Downloading seaborn-0.13.2-py3-none-any.whl.metadata (5.4 kB) Collecting python-dateutil>=2.8.2 (from pandas->-r requirements.txt (line 7)) Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Collecting pytz>=2020.1 (from pandas->-r requirements.txt (line 7)) Downloading pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) Collecting tzdata>=2022.7 (from pandas->-r requirements.txt (line 7)) Downloading tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) Collecting typing-extensions (from pint>=0.19->-r requirements.txt (line 8)) Downloading typing_extensions-4.11.0-py3-none-any.whl.metadata (3.0 kB) Collecting globalwarmingpotentials (from openscm-units->-r requirements.txt (line 9)) Downloading globalwarmingpotentials-0.9.4-py2.py3-none-any.whl.metadata (4.1 kB) Collecting matplotlib!=3.6.1,>=3.4 (from seaborn->-r requirements.txt (line 10)) Downloading matplotlib-3.8.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.8 kB) Collecting contourpy>=1.0.1 (from matplotlib!=3.6.1,>=3.4->seaborn->-r requirements.txt (line 10)) Downloading contourpy-1.2.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.8 kB) Collecting cycler>=0.10 (from matplotlib!=3.6.1,>=3.4->seaborn->-r requirements.txt (line 10)) Downloading cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) Collecting fonttools>=4.22.0 (from matplotlib!=3.6.1,>=3.4->seaborn->-r requirements.txt (line 10)) Downloading fonttools-4.51.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (159 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 159.5/159.5 kB 43.2 MB/s eta 0:00:00 Collecting kiwisolver>=1.3.1 (from matplotlib!=3.6.1,>=3.4->seaborn->-r requirements.txt (line 10)) Downloading kiwisolver-1.4.5-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata (6.4 kB) Requirement already satisfied: packaging>=20.0 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->-r requirements.txt (line 10)) (24.0) Collecting pillow>=8 (from matplotlib!=3.6.1,>=3.4->seaborn->-r requirements.txt (line 10)) Downloading pillow-10.3.0-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (9.2 kB) Collecting pyparsing>=2.3.1 (from matplotlib!=3.6.1,>=3.4->seaborn->-r requirements.txt (line 10)) Downloading pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB) Collecting six>=1.5 (from python-dateutil>=2.8.2->pandas->-r 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kiwisolver-1.4.5 matplotlib-3.8.4 numpy-1.26.4 openscm-units-0.5.4 pandas-2.2.2 pillow-10.3.0 pint-0.23 pyparsing-3.1.2 python-dateutil-2.9.0.post0 pytz-2024.1 scipy-1.13.0 seaborn-0.13.2 six-1.16.0 typing-extensions-4.11.0 tzdata-2024.1 + pip install coverage Defaulting to user installation because normal site-packages is not writeable Collecting coverage Downloading coverage-7.4.4-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.2 kB) Downloading coverage-7.4.4-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (233 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 233.5/233.5 kB 25.5 MB/s eta 0:00:00 Installing collected packages: coverage Successfully installed coverage-7.4.4 + pip install . Defaulting to user installation because normal site-packages is not writeable Processing /home/build/OrgMatt Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: numpy>=1.20 in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.4.0) (1.26.4) Requirement already satisfied: scipy in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.4.0) (1.13.0) Requirement already satisfied: pandas in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.4.0) (2.2.2) Requirement already satisfied: pint>=0.19 in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.4.0) (0.23) Requirement already satisfied: openscm-units in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.4.0) (0.5.4) Requirement already satisfied: seaborn in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.4.0) (0.13.2) Requirement already satisfied: typing-extensions in /home/build/.local/lib/python3.10/site-packages (from pint>=0.19->OrgMatt==0.4.0) (4.11.0) Requirement already satisfied: globalwarmingpotentials in /home/build/.local/lib/python3.10/site-packages (from openscm-units->OrgMatt==0.4.0) (0.9.4) Requirement already satisfied: python-dateutil>=2.8.2 in /home/build/.local/lib/python3.10/site-packages (from pandas->OrgMatt==0.4.0) (2.9.0.post0) Requirement already satisfied: pytz>=2020.1 in /home/build/.local/lib/python3.10/site-packages (from pandas->OrgMatt==0.4.0) (2024.1) Requirement already satisfied: tzdata>=2022.7 in /home/build/.local/lib/python3.10/site-packages (from pandas->OrgMatt==0.4.0) (2024.1) Requirement already satisfied: matplotlib!=3.6.1,>=3.4 in /home/build/.local/lib/python3.10/site-packages (from seaborn->OrgMatt==0.4.0) (3.8.4) Requirement already satisfied: contourpy>=1.0.1 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.4.0) (1.2.1) Requirement already satisfied: cycler>=0.10 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.4.0) (0.12.1) Requirement already satisfied: fonttools>=4.22.0 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.4.0) (4.51.0) Requirement already satisfied: kiwisolver>=1.3.1 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.4.0) (1.4.5) Requirement already satisfied: packaging>=20.0 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.4.0) (24.0) Requirement already satisfied: pillow>=8 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.4.0) (10.3.0) Requirement already satisfied: pyparsing>=2.3.1 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.4.0) (3.1.2) Requirement already satisfied: six>=1.5 in /home/build/.local/lib/python3.10/site-packages (from python-dateutil>=2.8.2->pandas->OrgMatt==0.4.0) (1.16.0) Building wheels for collected packages: OrgMatt Building wheel for OrgMatt (pyproject.toml): started Building wheel for OrgMatt (pyproject.toml): finished with status 'done' Created wheel for OrgMatt: filename=OrgMatt-0.4.0-py3-none-any.whl size=109414 sha256=50ab8e1aa251a2701ac3c790fe8f228eb0aa037901495e0b73fa00864ede0200 Stored in directory: /tmp/pip-ephem-wheel-cache-bognudya/wheels/fa/c8/54/6668a436f152ec271fbc43c4d4817e40063b0c2195101cffa1 Successfully built OrgMatt Installing collected packages: OrgMatt Successfully installed OrgMatt-0.4.0 |
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+ cd OrgMatt + coverage run -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.10.12, pytest-8.1.1, pluggy-1.4.0 rootdir: /home/build/OrgMatt configfile: pyproject.toml collected 37 items tests/test_data.py ........... [ 29%] tests/test_excreta.py .. [ 35%] tests/test_food.py ... [ 43%] tests/test_impacts.py .. [ 48%] tests/test_metabolism.py ....... [ 67%] tests/test_nutrients.py ... [ 75%] tests/test_plots.py . [ 78%] tests/test_units.py .... [ 89%] tests/test_utils.py .... [100%] ============================= 37 passed in 12.17s ============================== + coverage report -m Name Stmts Miss Cover Missing --------------------------------------------------------------------- orgmatt/__init__.py 26 0 100% orgmatt/_utils/__init__.py 4 0 100% orgmatt/_utils/logger.py 24 2 92% 37, 43 orgmatt/_utils/tools.py 260 9 97% 245, 266, 377-380, 388-389, 398, 410 orgmatt/agrifood/__init__.py 3 0 100% orgmatt/agrifood/biowaste.py 22 2 91% 80, 83 orgmatt/agrifood/human_consumption.py 26 0 100% orgmatt/data/__init__.py 45 0 100% orgmatt/excreta.py 24 0 100% orgmatt/impacts/__init__.py 2 0 100% orgmatt/impacts/fertilizers.py 17 0 100% orgmatt/impacts/water.py 21 1 95% 68 orgmatt/metabolism/__init__.py 4 0 100% orgmatt/metabolism/corrections.py 66 5 92% 142, 149-150, 156, 167 orgmatt/metabolism/metabolic_model.py 122 4 97% 151, 161, 324, 385 orgmatt/metabolism/nutrient_flows.py 72 2 97% 90, 184 orgmatt/nutrients/__init__.py 3 0 100% orgmatt/nutrients/all_nutrients.py 56 2 96% 159, 229 orgmatt/nutrients/nitrogen.py 12 0 100% orgmatt/nutrients/phosphorus.py 12 0 100% orgmatt/plot/__init__.py 3 0 100% orgmatt/plot/distributions.py 66 8 88% 72, 81-82, 89, 127, 180, 195, 198 orgmatt/typing.py 7 0 100% orgmatt/units.py 125 9 93% 110-114, 117, 120, 123, 190, 209, 217 --------------------------------------------------------------------- TOTAL 1022 44 96% |
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+ cd OrgMatt ++ git show -s --pretty=%D HEAD ++ grep -v HEAD ++ tr -s ', /' '\n' ++ sed -n 2p + GIT_BRANCH=main + set +x % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 126 100 66 100 60 94 86 --:--:-- --:--:-- --:--:-- 181 100 126 100 66 100 60 94 86 --:--:-- --:--:-- --:--:-- 181 {"build_triggered":true,"project":"orgmatt","versions":["latest"]} |