~tfardet/#1138945

failed

18dbe28Tanguy Fardet

Improved config

Owner
~tfardet
Created
9 months ago
Updated
9 months ago
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setup
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[#1138945] 2024/01/27 21:04:10 Booting image ubuntu/lts (default) on port 22850
[#1138945] 2024/01/27 21:04:10 Waiting for guest to settle
[#1138945] 2024/01/27 21:04:17 Sending tasks
[#1138945] 2024/01/27 21:04:19 Sending build environment
[#1138945] 2024/01/27 21:04:19 Sending secrets
[#1138945] 2024/01/27 21:04:19 Resolving secret ceb490c3-68b4-41f7-9aa9-eb2e4b91d424
[#1138945] 2024/01/27 21:04:20 Resolving secret 0b249c79-8eaf-4b82-b1d1-f3c38c7eae4b
[#1138945] 2024/01/27 21:04:21 Resolving secret 3a7c042a-24d8-4f53-b75c-f061f7517b65
[#1138945] 2024/01/27 21:04:22 Installing packages
Warning: Permanently added '[localhost]:22850' (ED25519) to the list of known hosts.
Hit:1 http://archive.ubuntu.com/ubuntu jammy InRelease
Get:2 http://archive.ubuntu.com/ubuntu jammy-security InRelease [110 kB]
Get:3 http://archive.ubuntu.com/ubuntu jammy-updates InRelease [119 kB]
Get:4 http://archive.ubuntu.com/ubuntu jammy-backports InRelease [109 kB]
Get:5 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 Packages [1102 kB]
Get:6 http://archive.ubuntu.com/ubuntu jammy-security/main Translation-en [207 kB]
Get:7 http://archive.ubuntu.com/ubuntu jammy-security/restricted amd64 Packages [1306 kB]
Get:8 http://archive.ubuntu.com/ubuntu jammy-security/restricted Translation-en [213 kB]
Get:9 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 Packages [834 kB]
Get:10 http://archive.ubuntu.com/ubuntu jammy-security/universe Translation-en [159 kB]
Get:11 http://archive.ubuntu.com/ubuntu jammy-security/multiverse amd64 Packages [37.1 kB]
Get:12 http://archive.ubuntu.com/ubuntu jammy-security/multiverse Translation-en [7476 B]
Get:13 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 Packages [1320 kB]
Get:14 http://archive.ubuntu.com/ubuntu jammy-updates/main Translation-en [267 kB]
Get:15 http://archive.ubuntu.com/ubuntu jammy-updates/restricted amd64 Packages [1334 kB]
Get:16 http://archive.ubuntu.com/ubuntu jammy-updates/restricted Translation-en [218 kB]
Get:17 http://archive.ubuntu.com/ubuntu jammy-updates/universe amd64 Packages [1035 kB]
Get:18 http://archive.ubuntu.com/ubuntu jammy-updates/universe Translation-en [232 kB]
Get:19 http://archive.ubuntu.com/ubuntu jammy-updates/multiverse amd64 Packages [42.1 kB]
Get:20 http://archive.ubuntu.com/ubuntu jammy-updates/multiverse Translation-en [10.1 kB]
Get:21 http://archive.ubuntu.com/ubuntu jammy-backports/main amd64 Packages [41.7 kB]
Get:22 http://archive.ubuntu.com/ubuntu jammy-backports/universe amd64 Packages [24.2 kB]
Fetched 8728 kB in 2s (4476 kB/s)
Reading package lists...
Warning: Permanently added '[localhost]:22850' (ED25519) to the list of known hosts.
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  javascript-common libexpat1-dev libjs-jquery libjs-sphinxdoc
  libjs-underscore libpython3-dev libpython3.10 libpython3.10-dev python3-dev
  python3-distutils python3-lib2to3 python3-setuptools python3-wheel
  python3.10-dev zlib1g-dev
Suggested packages:
  apache2 | lighttpd | httpd python-setuptools-doc
The following NEW packages will be installed:
  javascript-common libexpat1-dev libjs-jquery libjs-sphinxdoc
  libjs-underscore libpython3-dev libpython3.10 libpython3.10-dev python3-dev
  python3-distutils python3-lib2to3 python3-pip python3-setuptools
  python3-wheel python3.10-dev zlib1g-dev
0 upgraded, 16 newly installed, 0 to remove and 34 not upgraded.
Need to get 10.0 MB of archives.
After this operation, 40.5 MB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu jammy/main amd64 javascript-common all 11+nmu1 [5936 B]
Get:2 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libexpat1-dev amd64 2.4.7-1ubuntu0.2 [147 kB]
Get:3 http://archive.ubuntu.com/ubuntu jammy/main amd64 libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [321 kB]
Get:4 http://archive.ubuntu.com/ubuntu jammy/main amd64 libjs-underscore all 1.13.2~dfsg-2 [118 kB]
Get:5 http://archive.ubuntu.com/ubuntu jammy/main amd64 libjs-sphinxdoc all 4.3.2-1 [139 kB]
Get:6 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libpython3.10 amd64 3.10.12-1~22.04.3 [1948 kB]
Get:7 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu9.2 [164 kB]
Get:8 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libpython3.10-dev amd64 3.10.12-1~22.04.3 [4762 kB]
Get:9 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libpython3-dev amd64 3.10.6-1~22.04 [7166 B]
Get:10 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3.10-dev amd64 3.10.12-1~22.04.3 [507 kB]
Get:11 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-lib2to3 all 3.10.8-1~22.04 [77.6 kB]
Get:12 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-distutils all 3.10.8-1~22.04 [139 kB]
Get:13 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-dev amd64 3.10.6-1~22.04 [26.0 kB]
Get:14 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-setuptools all 59.6.0-1.2ubuntu0.22.04.1 [339 kB]
Get:15 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 python3-wheel all 0.37.1-2ubuntu0.22.04.1 [32.0 kB]
Get:16 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 python3-pip all 22.0.2+dfsg-1ubuntu0.4 [1305 kB]
Fetched 10.0 MB in 1s (8357 kB/s)
Selecting previously unselected package javascript-common.
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(Reading database ... 100%
(Reading database ... 38978 files and directories currently installed.)
Preparing to unpack .../00-javascript-common_11+nmu1_all.deb ...
Unpacking javascript-common (11+nmu1) ...
Selecting previously unselected package libexpat1-dev:amd64.
Preparing to unpack .../01-libexpat1-dev_2.4.7-1ubuntu0.2_amd64.deb ...
Unpacking libexpat1-dev:amd64 (2.4.7-1ubuntu0.2) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../02-libjs-jquery_3.6.0+dfsg+~3.5.13-1_all.deb ...
Unpacking libjs-jquery (3.6.0+dfsg+~3.5.13-1) ...
Selecting previously unselected package libjs-underscore.
Preparing to unpack .../03-libjs-underscore_1.13.2~dfsg-2_all.deb ...
Unpacking libjs-underscore (1.13.2~dfsg-2) ...
Selecting previously unselected package libjs-sphinxdoc.
Preparing to unpack .../04-libjs-sphinxdoc_4.3.2-1_all.deb ...
Unpacking libjs-sphinxdoc (4.3.2-1) ...
Selecting previously unselected package libpython3.10:amd64.
Preparing to unpack .../05-libpython3.10_3.10.12-1~22.04.3_amd64.deb ...
Unpacking libpython3.10:amd64 (3.10.12-1~22.04.3) ...
Selecting previously unselected package zlib1g-dev:amd64.
Preparing to unpack .../06-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu9.2_amd64.deb ...
Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu9.2) ...
Selecting previously unselected package libpython3.10-dev:amd64.
Preparing to unpack .../07-libpython3.10-dev_3.10.12-1~22.04.3_amd64.deb ...
Unpacking libpython3.10-dev:amd64 (3.10.12-1~22.04.3) ...
Selecting previously unselected package libpython3-dev:amd64.
Preparing to unpack .../08-libpython3-dev_3.10.6-1~22.04_amd64.deb ...
Unpacking libpython3-dev:amd64 (3.10.6-1~22.04) ...
Selecting previously unselected package python3.10-dev.
Preparing to unpack .../09-python3.10-dev_3.10.12-1~22.04.3_amd64.deb ...
Unpacking python3.10-dev (3.10.12-1~22.04.3) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../10-python3-lib2to3_3.10.8-1~22.04_all.deb ...
Unpacking python3-lib2to3 (3.10.8-1~22.04) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../11-python3-distutils_3.10.8-1~22.04_all.deb ...
Unpacking python3-distutils (3.10.8-1~22.04) ...
Selecting previously unselected package python3-dev.
Preparing to unpack .../12-python3-dev_3.10.6-1~22.04_amd64.deb ...
Unpacking python3-dev (3.10.6-1~22.04) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../13-python3-setuptools_59.6.0-1.2ubuntu0.22.04.1_all.deb ...
Unpacking python3-setuptools (59.6.0-1.2ubuntu0.22.04.1) ...
Selecting previously unselected package python3-wheel.
Preparing to unpack .../14-python3-wheel_0.37.1-2ubuntu0.22.04.1_all.deb ...
Unpacking python3-wheel (0.37.1-2ubuntu0.22.04.1) ...
Selecting previously unselected package python3-pip.
Preparing to unpack .../15-python3-pip_22.0.2+dfsg-1ubuntu0.4_all.deb ...
Unpacking python3-pip (22.0.2+dfsg-1ubuntu0.4) ...
Setting up javascript-common (11+nmu1) ...
Setting up libpython3.10:amd64 (3.10.12-1~22.04.3) ...
Setting up libexpat1-dev:amd64 (2.4.7-1ubuntu0.2) ...
Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu9.2) ...
Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ...
Setting up python3-lib2to3 (3.10.8-1~22.04) ...
Setting up libjs-underscore (1.13.2~dfsg-2) ...
Setting up python3-distutils (3.10.8-1~22.04) ...
Setting up python3-setuptools (59.6.0-1.2ubuntu0.22.04.1) ...
Setting up python3-wheel (0.37.1-2ubuntu0.22.04.1) ...
Setting up libpython3.10-dev:amd64 (3.10.12-1~22.04.3) ...
Setting up python3-pip (22.0.2+dfsg-1ubuntu0.4) ...
Setting up libjs-sphinxdoc (4.3.2-1) ...
Setting up python3.10-dev (3.10.12-1~22.04.3) ...
Setting up libpython3-dev:amd64 (3.10.6-1~22.04) ...
Setting up python3-dev (3.10.6-1~22.04) ...
Processing triggers for libc-bin (2.35-0ubuntu3.5) ...
[#1138945] 2024/01/27 21:04:28 Cloning repositories
Cloning into 'NNGT'...
+ cd NNGT
+ git checkout -q 18dbe285ec44f2d5f74742fd9565a97d6d8a6689
+ cd NNGT
+ git submodule update --init --recursive
Submodule 'nngt/geometry' (https://github.com/SENeC-Initiative/PyNCulture.git) registered for path 'nngt/geometry'
Submodule 'nngt/plot/chord_diag' (https://codeberg.org/tfardet/mpl_chord_diagram.git) registered for path 'nngt/plot/chord_diag'
Cloning into '/home/build/NNGT/nngt/geometry'...
Cloning into '/home/build/NNGT/nngt/plot/chord_diag'...
Submodule path 'nngt/geometry': checked out '33a9455bebd2400e66db2cc2a58799f42ae563ad'
Submodule path 'nngt/plot/chord_diag': checked out 'bebf3026554aeed7b64842c117545e9c0cc41860'
[#1138945] 2024/01/27 21:04:30 Running task check
[#1138945] 2024/01/27 21:04:34 Running task setup
[#1138945] 2024/01/27 21:06:30 Running task test
[#1138945] 2024/01/27 21:07:47 Build failed.
[#1138945] 2024/01/27 21:07:47 The build environment will be kept alive for 10 minutes.
[#1138945] 2024/01/27 21:07:47 To log in with SSH and examine it, use the following command:
[#1138945] 2024/01/27 21:07:47 
[#1138945] 2024/01/27 21:07:47 	ssh -t builds@fra01.builds.sr.ht connect 1138945
[#1138945] 2024/01/27 21:07:47 
[#1138945] 2024/01/27 21:07:47 After logging in, the deadline is increased to your remaining build time.
[#1138945] 2024/01/27 21:17:47 Deadline elapsed. Terminating build environment.
[#1138945] 2024/01/27 21:17:47 Error: Running task on guest: exit status 1
check
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+ export PATH=/home/build/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+ PATH=/home/build/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+ cd NNGT
+ python3 extra/check_headers.py
+ pip3 install reuse
Defaulting to user installation because normal site-packages is not writeable
Collecting reuse
  Downloading reuse-3.0.1.tar.gz (269 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 269.7/269.7 KB 12.7 MB/s eta 0:00:00
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting license-expression>=1.0
  Downloading license_expression-30.2.0-py3-none-any.whl (107 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 107.3/107.3 KB 63.9 MB/s eta 0:00:00
Collecting boolean.py>=3.8
  Downloading boolean.py-4.0-py3-none-any.whl (25 kB)
Collecting Jinja2<4.0.0,>=3.0.0
  Downloading Jinja2-3.1.3-py3-none-any.whl (133 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.2/133.2 KB 79.2 MB/s eta 0:00:00
Collecting python-debian!=0.1.45,!=0.1.46,!=0.1.47,<0.2.0,>=0.1.34
  Downloading python_debian-0.1.49-py3-none-any.whl (132 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 132.5/132.5 KB 79.1 MB/s eta 0:00:00
Collecting binaryornot<0.5.0,>=0.4.4
  Downloading binaryornot-0.4.4-py2.py3-none-any.whl (9.0 kB)
Collecting chardet>=3.0.2
  Downloading chardet-5.2.0-py3-none-any.whl (199 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 199.4/199.4 KB 104.3 MB/s eta 0:00:00
Collecting MarkupSafe>=2.0
  Downloading MarkupSafe-2.1.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
Building wheels for collected packages: reuse
  Building wheel for reuse (pyproject.toml): started
  Building wheel for reuse (pyproject.toml): finished with status 'done'
  Created wheel for reuse: filename=reuse-3.0.1-cp310-cp310-manylinux_2_35_x86_64.whl size=118499 sha256=cb6bdd7192730160ba19a84fdd1f5f366eb1a16893810d8136d92db69496ed06
  Stored in directory: /home/build/.cache/pip/wheels/55/f8/83/e60ce3c9e2ef3fe37c4343c66e0c40f8655055d5fff168d337
Successfully built reuse
Installing collected packages: boolean.py, MarkupSafe, license-expression, chardet, python-debian, Jinja2, binaryornot, reuse
Successfully installed Jinja2-3.1.3 MarkupSafe-2.1.4 binaryornot-0.4.4 boolean.py-4.0 chardet-5.2.0 license-expression-30.2.0 python-debian-0.1.49 reuse-3.0.1
+ reuse lint

# SUMMARY

* Bad licenses: 0
* Deprecated licenses: 0
* Licenses without file extension: 0
* Missing licenses: 0
* Unused licenses: 0
* Used licenses: CC0-1.0, CC-BY-SA-4.0, GPL-3.0-or-later, BSD-2-Clause, Python-2.0
* Read errors: 0
* files with copyright information: 182 / 182
* files with license information: 182 / 182

Congratulations! Your project is compliant with version 3.0 of the REUSE Specification :-)
setup


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This is a big file! Only the last 128KiB is shown. Click here to download the full log.

Get:140 http://archive.ubuntu.com/ubuntu jammy/main amd64 libnuma-dev amd64 2.0.14-3ubuntu2 [35.9 kB]
Get:141 http://archive.ubuntu.com/ubuntu jammy-updates/universe amd64 libhwloc-dev amd64 2.7.0-2ubuntu1 [256 kB]
Get:142 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libpmix-dev amd64 4.1.2-2ubuntu1 [805 kB]
Get:143 http://archive.ubuntu.com/ubuntu jammy/universe amd64 proj-data all 8.2.1-1 [10.0 MB]
Get:144 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libproj22 amd64 8.2.1-1 [1257 kB]
Get:145 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libqhull-r8.0 amd64 2020.2-4 [196 kB]
Get:146 http://archive.ubuntu.com/ubuntu jammy/main amd64 libraqm0 amd64 0.7.0-4ubuntu1 [11.7 kB]
Get:147 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libsqlite3-dev amd64 3.37.2-2ubuntu0.3 [846 kB]
Get:148 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libtbbmalloc2 amd64 2021.5.0-7ubuntu2 [49.6 kB]
Get:149 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libtbb12 amd64 2021.5.0-7ubuntu2 [84.8 kB]
Get:150 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libjbig-dev amd64 2.1-3.1ubuntu0.22.04.1 [27.4 kB]
Get:151 http://archive.ubuntu.com/ubuntu jammy/main amd64 liblzma-dev amd64 5.2.5-2ubuntu1 [159 kB]
Get:152 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libtiffxx5 amd64 4.3.0-6ubuntu0.7 [5736 B]
Get:153 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libtiff-dev amd64 4.3.0-6ubuntu0.7 [315 kB]
Get:154 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libtinfo-dev amd64 6.3-2ubuntu0.1 [780 B]
Get:155 http://archive.ubuntu.com/ubuntu jammy/main amd64 libtool all 2.4.6-15build2 [164 kB]
Get:156 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libwebpdemux2 amd64 1.2.2-2ubuntu0.22.04.2 [9964 B]
Get:157 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libwebpmux3 amd64 1.2.2-2ubuntu0.22.04.2 [20.5 kB]
Get:158 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libxml2-dev amd64 2.9.13+dfsg-1ubuntu0.3 [804 kB]
Get:159 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libxsimd-dev amd64 7.6.0-2 [108 kB]
Get:160 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libxslt1.1 amd64 1.1.34-4ubuntu0.22.04.1 [164 kB]
Get:161 http://archive.ubuntu.com/ubuntu jammy/universe amd64 llvm-11-runtime amd64 1:11.1.0-6 [186 kB]
Get:162 http://archive.ubuntu.com/ubuntu jammy/universe amd64 llvm-11-linker-tools amd64 1:11.1.0-6 [1275 kB]
Get:163 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libpfm4 amd64 4.11.1+git32-gd0b85fb-1ubuntu0.1 [345 kB]
Get:164 http://archive.ubuntu.com/ubuntu jammy/universe amd64 llvm-11 amd64 1:11.1.0-6 [9118 kB]
Get:165 http://archive.ubuntu.com/ubuntu jammy/main amd64 libffi-dev amd64 3.4.2-4 [63.7 kB]
Get:166 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-pygments all 2.11.2+dfsg-2 [750 kB]
Get:167 http://archive.ubuntu.com/ubuntu jammy/universe amd64 llvm-11-tools amd64 1:11.1.0-6 [359 kB]
Get:168 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libz3-4 amd64 4.8.12-1 [5766 kB]
Get:169 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libz3-dev amd64 4.8.12-1 [72.2 kB]
Get:170 http://archive.ubuntu.com/ubuntu jammy/universe amd64 llvm-11-dev amd64 1:11.1.0-6 [29.9 MB]
Get:171 http://archive.ubuntu.com/ubuntu jammy/main amd64 mailcap all 3.70+nmu1ubuntu1 [23.8 kB]
Get:172 http://archive.ubuntu.com/ubuntu jammy/main amd64 mime-support all 3.66 [3696 B]
Get:173 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-numpy amd64 1:1.21.5-1ubuntu22.04.1 [3467 kB]
Get:174 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-dateutil all 2.8.1-6 [78.4 kB]
Get:175 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 python3-tz all 2022.1-1ubuntu0.22.04.1 [30.7 kB]
Get:176 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-pandas-lib amd64 1.3.5+dfsg-3 [3735 kB]
Get:177 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-pandas all 1.3.5+dfsg-3 [2680 kB]
Get:178 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB]
Get:179 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-gast all 0.5.2-2 [9394 B]
Get:180 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-beniget all 0.4.1-2 [9904 B]
Get:181 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-ply all 3.11-5 [47.5 kB]
Get:182 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-pythran amd64 0.10.0+ds2-1 [423 kB]
Get:183 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-scipy amd64 1.8.0-1exp2ubuntu1 [14.7 MB]
Get:184 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python-matplotlib-data all 3.5.1-2build1 [2942 kB]
Get:185 http://archive.ubuntu.com/ubuntu jammy/main amd64 libopenjp2-7 amd64 2.4.0-6 [158 kB]
Get:186 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-pil amd64 9.0.1-1ubuntu0.1 [419 kB]
Get:187 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-tk amd64 3.10.8-1~22.04 [110 kB]
Get:188 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 python3-pil.imagetk amd64 9.0.1-1ubuntu0.1 [9608 B]
Get:189 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-cycler all 0.11.0-1 [8156 B]
Get:190 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-brotli amd64 1.0.9-2build6 [319 kB]
Get:191 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-attr all 21.2.0-1 [44.0 kB]
Get:192 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-ufolib2 all 0.13.1+dfsg1-1 [32.2 kB]
Get:193 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-mpmath all 1.2.1-2 [419 kB]
Get:194 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-sympy all 1.9-1 [4312 kB]
Get:195 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-appdirs all 1.4.4-2 [11.4 kB]
Get:196 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-fs all 2.4.12-1 [84.9 kB]
Get:197 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-lxml amd64 4.8.0-1build1 [1150 kB]
Get:198 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-lz4 amd64 3.1.3+dfsg-1build3 [33.3 kB]
Get:199 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-unicodedata2 amd64 14.0.0+ds-8 [376 kB]
Get:200 http://archive.ubuntu.com/ubuntu jammy/universe amd64 unicode-data all 14.0.0-1.1 [8206 kB]
Get:201 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-fonttools amd64 4.29.1-2build1 [810 kB]
Get:202 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-kiwisolver amd64 1.3.2-1build1 [48.0 kB]
Get:203 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-packaging all 21.3-1 [30.7 kB]
Get:204 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-matplotlib amd64 3.5.1-2build1 [5937 kB]
Get:205 http://archive.ubuntu.com/ubuntu jammy/universe amd64 mpi-default-bin amd64 1.14 [2898 B]
Get:206 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-mpi4py amd64 3.1.3-1build2 [465 kB]
Get:207 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-h5py-serial amd64 3.6.0-2build1 [872 kB]
Get:208 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-h5py all 3.6.0-2build1 [4740 B]
Get:209 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-pydot all 1.4.2-1build1 [25.8 kB]
Get:210 http://archive.ubuntu.com/ubuntu jammy/main amd64 sphinx-rtd-theme-common all 1.0.0+dfsg-1 [991 kB]
Get:211 http://archive.ubuntu.com/ubuntu jammy/universe amd64 numba-doc all 0.55.1-0ubuntu2 [737 kB]
Get:212 http://archive.ubuntu.com/ubuntu jammy/main amd64 python-babel-localedata all 2.8.0+dfsg.1-7 [4982 kB]
Get:213 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python-odf-doc all 1.4.2-1 [222 kB]
Get:214 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-defusedxml all 0.7.1-1 [43.2 kB]
Get:215 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-odf all 1.4.2-1 [79.3 kB]
Get:216 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python-odf-tools all 1.4.2-1 [27.3 kB]
Get:217 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python-tables-data all 3.7.0-2build1 [47.6 kB]
Get:218 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-babel all 2.8.0+dfsg.1-7 [85.1 kB]
Get:219 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-bottleneck amd64 1.3.2+ds1-2build1 [82.9 kB]
Get:220 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-soupsieve all 2.3.1-1 [33.0 kB]
Get:221 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-bs4 all 4.10.0-2 [79.1 kB]
Get:222 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-chardet all 4.0.0-1 [98.0 kB]
Get:223 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-et-xmlfile all 1.0.1-2.1 [9224 B]
Get:224 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-webencodings all 0.5.1-4 [11.8 kB]
Get:225 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-html5lib all 1.1-3 [87.0 kB]
Get:226 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B]
Get:227 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-jdcal all 1.0-1.3 [7944 B]
Get:228 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-markupsafe amd64 2.0.1-2build1 [12.7 kB]
Get:229 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-jinja2 all 3.0.3-1ubuntu0.1 [108 kB]
Get:230 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-llvmlite amd64 0.38.0-1 [126 kB]
Get:231 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-numba amd64 0.55.1-0ubuntu2 [1588 kB]
Get:232 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-numexpr amd64 2.8.1-1build1 [86.0 kB]
Get:233 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-olefile all 0.46-3 [33.8 kB]
Get:234 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-openpyxl all 3.0.9-1 [148 kB]
Get:235 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-pluggy all 0.13.0-7.1 [19.0 kB]
Get:236 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-py all 1.10.0-1 [71.9 kB]
Get:237 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-toml all 0.10.2-1 [16.5 kB]
Get:238 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-pytest all 6.2.5-1ubuntu2 [214 kB]
Get:239 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-tables-lib amd64 3.7.0-2build1 [427 kB]
Get:240 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-tables all 3.7.0-2build1 [333 kB]
Get:241 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-xlwt all 1.3.0-3 [83.7 kB]
Get:242 http://archive.ubuntu.com/ubuntu jammy/main amd64 libibverbs-dev amd64 39.0-1 [628 kB]
Get:243 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libopenmpi-dev amd64 4.1.2-2ubuntu1 [867 kB]
Get:244 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libproj-dev amd64 8.2.1-1 [1594 kB]
Get:245 http://archive.ubuntu.com/ubuntu jammy/universe amd64 proj-bin amd64 8.2.1-1 [154 kB]
debconf: unable to initialize frontend: Dialog
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debconf: (This frontend requires a controlling tty.)
debconf: falling back to frontend: Teletype
dpkg-preconfigure: unable to re-open stdin: 
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Setting up libssl3:amd64 (3.0.2-0ubuntu1.13) ...

debconf: unable to initialize frontend: Dialog

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Unpacking python3-openpyxl (3.0.9-1) ...

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Unpacking python3-py (1.10.0-1) ...

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Unpacking libibverbs-dev:amd64 (39.0-1) ...

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Unpacking proj-bin (8.2.1-1) ...

Setting up dh-python (5.20220403) ...

Setting up libpipeline1:amd64 (1.5.5-1) ...

Setting up libgraphite2-3:amd64 (1.3.14-1build2) ...

Setting up liblcms2-2:amd64 (2.12~rc1-2build2) ...

Setting up python3-iniconfig (1.1.1-2) ...

Setting up libtbbmalloc2:amd64 (2021.5.0-7ubuntu2) ...

Setting up libpixman-1-0:amd64 (0.40.0-1ubuntu0.22.04.1) ...

Setting up python3-attr (21.2.0-1) ...

Setting up libgeos3.10.2:amd64 (3.10.2-1) ...

Setting up libpciaccess0:amd64 (0.16-3) ...

Setting up fontconfig (2.13.1-4.2ubuntu5) ...

Regenerating fonts cache... done.

Setting up libjpeg-turbo8-dev:amd64 (2.1.2-0ubuntu1) ...

Setting up libncurses-dev:amd64 (6.3-2ubuntu0.1) ...

Setting up libboost1.74-dev:amd64 (1.74.0-14ubuntu3) ...

Setting up fonts-lato (2.0-2.1) ...

Setting up proj-data (8.2.1-1) ...

Setting up hdf5-helpers (1.10.7+repack-4ubuntu2) ...

Setting up libxrender1:amd64 (1:0.9.10-1build4) ...

Setting up python3-py (1.10.0-1) ...

Setting up libdatrie1:amd64 (0.2.13-2) ...

Setting up python3-jdcal (1.0-1.3) ...

Setting up libgslcblas0:amd64 (2.7.1+dfsg-3) ...

Setting up libmagic-mgc (1:5.41-3ubuntu0.1) ...

Setting up python3-lz4 (3.1.3+dfsg-1build3) ...

Setting up libxcb-render0:amd64 (1.14-3ubuntu3) ...

Setting up python3-defusedxml (0.7.1-1) ...

Setting up python3-unicodedata2 (14.0.0+ds-8) ...

Setting up fonts-lyx (2.3.6-1) ...

Setting up python3-olefile (0.46-3) ...

Setting up libwebpdemux2:amd64 (1.2.2-2ubuntu0.22.04.2) ...

Setting up python3-ply (3.11-5) ...

Setting up liblab-gamut1:amd64 (2.42.2-6) ...

Setting up x11-common (1:7.7+23ubuntu2) ...

debconf: unable to initialize frontend: Dialog

debconf: (Dialog frontend will not work on a dumb terminal, an emacs shell buffer, or without a controlling terminal.)

debconf: falling back to frontend: Readline

Setting up libmagic1:amd64 (1:5.41-3ubuntu0.1) ...

Setting up python3-gast (0.5.2-2) ...

Setting up libjbig-dev:amd64 (2.1-3.1ubuntu0.22.04.1) ...

Setting up libgsl27:amd64 (2.7.1+dfsg-3) ...

Setting up libqhull-r8.0:amd64 (2020.2-4) ...

Setting up liblzo2-2:amd64 (2.10-2build3) ...

Setting up libtbb12:amd64 (2021.5.0-7ubuntu2) ...

Setting up libxcb-shm0:amd64 (1.14-3ubuntu3) ...

Setting up file (1:5.41-3ubuntu0.1) ...

Setting up libproj22:amd64 (8.2.1-1) ...

Setting up libcurl4-gnutls-dev:amd64 (7.81.0-1ubuntu1.15) ...

Setting up libffi-dev:amd64 (3.4.2-4) ...

Setting up python3-markupsafe (2.0.1-2build1) ...

Setting up python3-webencodings (0.5.1-4) ...

Setting up libcairo2:amd64 (1.16.0-5ubuntu2) ...

Setting up libaec0:amd64 (1.0.6-1) ...

Setting up python3-tz (2022.1-1ubuntu0.22.04.1) ...

Setting up python-babel-localedata (2.8.0+dfsg.1-7) ...

Setting up libsnappy1v5:amd64 (1.1.8-1build3) ...

Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu1) ...

Setting up unicode-data (14.0.0-1.1) ...

Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-5) ...

Setting up python3-beniget (0.4.1-2) ...

Setting up libxsimd-dev:amd64 (7.6.0-2) ...

Setting up python3-decorator (4.4.2-0ubuntu1) ...

Setting up autotools-dev (20220109.1) ...

Setting up python3-pygments (2.11.2+dfsg-2) ...

Setting up libz3-4:amd64 (4.8.12-1) ...

Setting up libblas3:amd64 (3.10.0-2ubuntu1) ...

update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode

Setting up python3-packaging (21.3-1) ...

Setting up libgmpxx4ldbl:amd64 (2:6.2.1+dfsg-3ubuntu1) ...

Setting up libpfm4:amd64 (4.11.1+git32-gd0b85fb-1ubuntu0.1) ...

Setting up python3-chardet (4.0.0-1) ...

Setting up libllvm11:amd64 (1:11.1.0-6) ...

Setting up libjs-jquery-ui (1.13.1+dfsg-1) ...

Setting up libsqlite3-dev:amd64 (3.37.2-2ubuntu0.3) ...

Setting up libpathplan4:amd64 (2.42.2-6) ...

Setting up python3-brotli (1.0.9-2build6) ...

Setting up libann0 (1.1.2+doc-7build1) ...

Setting up liblzf1:amd64 (3.6-3) ...

Setting up libsigsegv2:amd64 (2.13-1ubuntu3) ...

Setting up python3-cycler (0.11.0-1) ...

Setting up python-odf-doc (1.4.2-1) ...

Setting up libimagequant0:amd64 (2.17.0-1) ...

Setting up libssl-dev:amd64 (3.0.2-0ubuntu1.13) ...

Setting up python3-kiwisolver (1.3.2-1build1) ...

Setting up libhwloc15:amd64 (2.7.0-2ubuntu1) ...

Setting up python3-xlwt (1.3.0-3) ...

Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-1build3) ...

Setting up libevent-2.1-7:amd64 (2.1.12-stable-1build3) ...

Setting up cython3 (0.29.28-1ubuntu3) ...

Setting up libtcl8.6:amd64 (8.6.12+dfsg-1build1) ...

Setting up binfmt-support (2.2.1-2) ...

update-binfmts: warning: python3.10 already enabled in kernel.

Created symlink /etc/systemd/system/multi-user.target.wants/binfmt-support.service → /lib/systemd/system/binfmt-support.service.

Setting up icu-devtools (70.1-2) ...

Setting up libgeos-c1v5:amd64 (3.10.2-1) ...

Setting up python3-html5lib (1.1-3) ...

Setting up libltdl7:amd64 (2.4.6-15build2) ...

Setting up python3-toml (0.10.2-1) ...

Setting up libgfortran5:amd64 (12.3.0-1ubuntu1~22.04) ...

Setting up python3-pluggy (0.13.0-7.1) ...

Setting up llvm-11-linker-tools (1:11.1.0-6) ...

Setting up liblzma-dev:amd64 (5.2.5-2ubuntu1) ...

Setting up libnuma1:amd64 (2.0.14-3ubuntu2) ...

Setting up ocl-icd-libopencl1:amd64 (2.2.14-3) ...

Setting up libxslt1.1:amd64 (1.1.34-4ubuntu0.22.04.1) ...

Setting up libblosc1:amd64 (1.21.1+ds2-2) ...

Setting up fonts-liberation (1:1.07.4-11) ...

Setting up libnl-3-200:amd64 (3.5.0-0.1) ...

Setting up python3-et-xmlfile (1.0.1-2.1) ...

Setting up libpsm2-2 (11.2.185-1) ...

Setting up openmpi-common (4.1.2-2ubuntu1) ...

Setting up libopenjp2-7:amd64 (2.4.0-6) ...

Setting up libharfbuzz0b:amd64 (2.7.4-1ubuntu3.1) ...

Setting up libthai-data (0.1.29-1build1) ...

Setting up python3-dateutil (2.8.1-6) ...

Setting up libcdt5:amd64 (2.42.2-6) ...

Setting up libcgraph6:amd64 (2.42.2-6) ...

Setting up libboost-dev:amd64 (1.74.0.3ubuntu7) ...

Setting up libxss1:amd64 (1:1.2.3-1build2) ...

Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ...

update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode

Setting up libjpeg8-dev:amd64 (8c-2ubuntu10) ...

Setting up python3-mpmath (1.2.1-2) ...

Setting up python-matplotlib-data (3.5.1-2build1) ...

Setting up libwebpmux3:amd64 (1.2.2-2ubuntu0.22.04.2) ...

Setting up libdeflate-dev:amd64 (1.10-2) ...

Setting up python3-appdirs (1.4.4-2) ...

Setting up mailcap (3.70+nmu1ubuntu1) ...

Setting up libicu-dev:amd64 (70.1-2) ...

Setting up python3-soupsieve (2.3.1-1) ...

Setting up python-tables-data (3.7.0-2build1) ...

Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...

Setting up sphinx-rtd-theme-common (1.0.0+dfsg-1) ...

Setting up libonig5:amd64 (6.9.7.1-2build1) ...

Setting up libsz2:amd64 (1.0.6-1) ...

Setting up libtiffxx5:amd64 (4.3.0-6ubuntu0.7) ...

Setting up python3-odf (1.4.2-1) ...

Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1build3) ...

Setting up python3-sympy (1.9-1) ...

Setting up libtinfo-dev:amd64 (6.3-2ubuntu0.1) ...

Setting up libgts-bin (0.7.6+darcs121130-5) ...

Setting up libz3-dev:amd64 (4.8.12-1) ...

Setting up libice6:amd64 (2:1.0.10-1build2) ...

Setting up libevent-extra-2.1-7:amd64 (2.1.12-stable-1build3) ...

Setting up liblapack3:amd64 (3.10.0-2ubuntu1) ...

update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode

Setting up libxft2:amd64 (2.3.4-1) ...

Setting up llvm-11-runtime (1:11.1.0-6) ...

Setting up libgsl-dev (2.7.1+dfsg-3) ...

Setting up libopenblas0-pthread:amd64 (0.3.20+ds-1) ...

update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode

update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode

update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode

Setting up libgmp-dev:amd64 (2:6.2.1+dfsg-3ubuntu1) ...

Setting up mime-support (3.66) ...

Setting up libtool (2.4.6-15build2) ...

Setting up python3-babel (2.8.0+dfsg.1-7) ...

update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode

Setting up libjq1:amd64 (1.6-2.1ubuntu3) ...

Setting up llvm-11-tools (1:11.1.0-6) ...

Setting up libgfortran-11-dev:amd64 (11.4.0-1ubuntu1~22.04) ...

Setting up python3-pytest (6.2.5-1ubuntu2) ...

Setting up libtk8.6:amd64 (8.6.12-1build1) ...

Setting up libaec-dev:amd64 (1.0.6-1) ...

Setting up libjpeg-dev:amd64 (8c-2ubuntu10) ...

Setting up python-odf-tools (1.4.2-1) ...

Setting up libevent-openssl-2.1-7:amd64 (2.1.12-stable-1build3) ...

Setting up proj-bin (8.2.1-1) ...

Setting up m4 (1.4.18-5ubuntu2) ...

Setting up llvm-11 (1:11.1.0-6) ...

Setting up libhwloc-plugins:amd64 (2.7.0-2ubuntu1) ...

Setting up python3-bs4 (4.10.0-2) ...

Setting up libnuma-dev:amd64 (2.0.14-3ubuntu2) ...

Setting up libnl-route-3-200:amd64 (3.5.0-0.1) ...

Setting up python3-fs (2.4.12-1) ...

Setting up libclang-cpp11 (1:11.1.0-6) ...

Setting up libthai0:amd64 (0.1.29-1build1) ...

Setting up python3-llvmlite (0.38.0-1) ...

Setting up python3-jinja2 (3.0.3-1ubuntu0.1) ...

Setting up libxml2-dev:amd64 (2.9.13+dfsg-1ubuntu0.3) ...

Setting up libtiff-dev:amd64 (4.3.0-6ubuntu0.7) ...

Setting up libgeos-dev (3.10.2-1) ...

Setting up libraqm0:amd64 (0.7.0-4ubuntu1) ...

Setting up libevent-dev (2.1.12-stable-1build3) ...

Setting up libproj-dev:amd64 (8.2.1-1) ...

Setting up python3-numpy (1:1.21.5-1ubuntu22.04.1) ...

Setting up gfortran-11 (11.4.0-1ubuntu1~22.04) ...

Setting up autoconf (2.71-2) ...

Setting up libgvpr2:amd64 (2.42.2-6) ...

Setting up libhdf5-103-1:amd64 (1.10.7+repack-4ubuntu2) ...

Setting up libnl-3-dev:amd64 (3.5.0-0.1) ...

Setting up libopenblas0:amd64 (0.3.20+ds-1) ...

Setting up python3-lxml:amd64 (4.8.0-1build1) ...

Setting up jq (1.6-2.1ubuntu3) ...

Setting up libhdf5-cpp-103-1:amd64 (1.10.7+repack-4ubuntu2) ...

Setting up numba-doc (0.55.1-0ubuntu2) ...

Setting up libsm6:amd64 (2:1.2.3-1build2) ...

Setting up liblbfgsb0:amd64 (3.0+dfsg.3-10) ...

Setting up libhdf5-hl-100:amd64 (1.10.7+repack-4ubuntu2) ...

Setting up automake (1:1.16.5-1.3) ...

update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode

Setting up libopenblas-pthread-dev:amd64 (0.3.20+ds-1) ...

update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode

update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode

update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode

Setting up libibverbs1:amd64 (39.0-1) ...

Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1build2) ...

Setting up llvm-11-dev (1:11.1.0-6) ...

Setting up libpmix2:amd64 (4.1.2-2ubuntu1) ...

Setting up ibverbs-providers:amd64 (39.0-1) ...

Setting up python3-tables-lib (3.7.0-2build1) ...

Setting up blt (2.5.3+dfsg-4.1build2) ...

Setting up python3-pandas-lib:amd64 (1.3.5+dfsg-3) ...

Setting up libpango-1.0-0:amd64 (1.50.6+ds-2ubuntu1) ...

Setting up python3-h5py-serial (3.6.0-2build1) ...

Setting up python3-tk:amd64 (3.10.8-1~22.04) ...

Setting up gfortran (4:11.2.0-1ubuntu1) ...

update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode

update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode

Setting up libnl-route-3-dev:amd64 (3.5.0-0.1) ...

Setting up libltdl-dev:amd64 (2.4.6-15build2) ...

Setting up python3-pil:amd64 (9.0.1-1ubuntu0.1) ...

Setting up libopenblas-dev:amd64 (0.3.20+ds-1) ...

Setting up libhdf5-hl-cpp-100:amd64 (1.10.7+repack-4ubuntu2) ...

Setting up python3-pandas (1.3.5+dfsg-3) ...

Setting up python3-pil.imagetk:amd64 (9.0.1-1ubuntu0.1) ...

Setting up python3-openpyxl (3.0.9-1) ...

Setting up python3-h5py (3.6.0-2build1) ...

Setting up python3-bottleneck (1.3.2+ds1-2build1) ...

Setting up libhdf5-fortran-102:amd64 (1.10.7+repack-4ubuntu2) ...

Setting up python3-numexpr (2.8.1-1build1) ...

Setting up libxt6:amd64 (1:1.2.1-1) ...

Setting up python3-pythran (0.10.0+ds2-1) ...

Setting up libhdf5-hl-fortran-100:amd64 (1.10.7+repack-4ubuntu2) ...

Setting up libhwloc-dev:amd64 (2.7.0-2ubuntu1) ...

Setting up libpangoft2-1.0-0:amd64 (1.50.6+ds-2ubuntu1) ...

Setting up libpmix-dev:amd64 (4.1.2-2ubuntu1) ...

Setting up libpangocairo-1.0-0:amd64 (1.50.6+ds-2ubuntu1) ...

Setting up librdmacm1:amd64 (39.0-1) ...

Setting up libucx0:amd64 (1.12.1~rc2-1) ...

Setting up libxmu6:amd64 (2:1.1.3-3) ...

Setting up python3-scipy (1.8.0-1exp2ubuntu1) ...

Setting up libcoarrays-dev:amd64 (2.9.2-3) ...

Setting up libxaw7:amd64 (2:1.0.14-1) ...

Setting up python3-tables (3.7.0-2build1) ...

Setting up libibverbs-dev:amd64 (39.0-1) ...

Setting up python3-numba (0.55.1-0ubuntu2) ...

update-alternatives: using /usr/share/python3-numba/numba to provide /usr/bin/numba (numba) in auto mode

Setting up libhdf5-dev (1.10.7+repack-4ubuntu2) ...

update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode

Setting up libgvc6 (2.42.2-6) ...

Setting up graphviz (2.42.2-6) ...

Setting up libfabric1:amd64 (1.11.0-3) ...

Setting up python3-pydot (1.4.2-1build1) ...

Setting up libopenmpi3:amd64 (4.1.2-2ubuntu1) ...

Setting up libcaf-openmpi-3:amd64 (2.9.2-3) ...

Setting up openmpi-bin (4.1.2-2ubuntu1) ...

update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode

update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode

Setting up mpi-default-bin (1.14) ...

Setting up python3-mpi4py (3.1.3-1build2) ...

Setting up libcoarrays-openmpi-dev:amd64 (2.9.2-3) ...

update-alternatives: using /usr/lib/x86_64-linux-gnu/open-coarrays/openmpi/bin/caf to provide /usr/bin/caf.openmpi (caf-openmpi) in auto mode

update-alternatives: using /usr/bin/caf.openmpi to provide /usr/bin/caf (caf) in auto mode

Setting up libopenmpi-dev:amd64 (4.1.2-2ubuntu1) ...

update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode

Setting up python3-fonttools (4.29.1-2build1) ...

Setting up python3-ufolib2 (0.13.1+dfsg1-1) ...

Setting up python3-matplotlib (3.5.1-2build1) ...

Setting up nest (3.6-2ubuntu1ppa1-1512~202311160928~ubuntu22.04.1) ...

Processing triggers for libc-bin (2.35-0ubuntu3.5) ...

+ sudo apt install -y python3-pip python3-tk libigraph-dev python3-graph-tool python3-cairo python3-cairocffi

WARNING: apt does not have a stable CLI interface. Use with caution in scripts.

Reading package lists...
Building dependency tree...
Reading state information...
python3-tk is already the newest version (3.10.8-1~22.04).
python3-tk set to manually installed.
python3-pip is already the newest version (22.0.2+dfsg-1ubuntu0.4).
The following additional packages will be installed:
  adwaita-icon-theme at-spi2-core dbus-user-session dconf-gsettings-backend
  dconf-service gir1.2-atk-1.0 gir1.2-freedesktop gir1.2-gdkpixbuf-2.0
  gir1.2-gtk-3.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0
  gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme
  humanity-icon-theme libamd2 libarpack2 libatk-bridge2.0-0 libatk1.0-0
  libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data
  libavahi-common3 libboost-context1.74.0 libboost-iostreams1.74.0
  libboost-python1.74.0 libboost-regex1.74.0 libcairo-gobject2
  libcairomm-1.0-1v5 libcolamd2 libcolord2 libcups2 libcxsparse3 libdconf1
  libepoxy0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common
  libglpk40 libgtk-3-0 libgtk-3-bin libgtk-3-common libigraph2
  libpangoxft-1.0-0 libplfit0 librsvg2-2 librsvg2-common libsigc++-2.0-0v5
  libsuitesparseconfig5 libwayland-client0 libwayland-cursor0 libwayland-egl1
  libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1
  libxkbcommon0 libxrandr2 libxtst6 python3-cffi python3-pycparser
  python3-xcffib session-migration ubuntu-mono
Suggested packages:
  colord cups-common libiodbc2-dev default-libmysqlclient-dev gvfs
  libigraph-doc pkg-config plfit plfit-doc librsvg2-bin python-cairocffi-doc
Recommended packages:
  libgv-python python-matplotlib python-cairo python-gi-cairo python-gi
The following NEW packages will be installed:
  adwaita-icon-theme at-spi2-core dbus-user-session dconf-gsettings-backend
  dconf-service gir1.2-atk-1.0 gir1.2-freedesktop gir1.2-gdkpixbuf-2.0
  gir1.2-gtk-3.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0
  gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme
  humanity-icon-theme libamd2 libarpack2 libatk-bridge2.0-0 libatk1.0-0
  libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data
  libavahi-common3 libboost-context1.74.0 libboost-iostreams1.74.0
  libboost-python1.74.0 libboost-regex1.74.0 libcairo-gobject2
  libcairomm-1.0-1v5 libcolamd2 libcolord2 libcups2 libcxsparse3 libdconf1
  libepoxy0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common
  libglpk40 libgtk-3-0 libgtk-3-bin libgtk-3-common libigraph-dev libigraph2
  libpangoxft-1.0-0 libplfit0 librsvg2-2 librsvg2-common libsigc++-2.0-0v5
  libsuitesparseconfig5 libwayland-client0 libwayland-cursor0 libwayland-egl1
  libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1
  libxkbcommon0 libxrandr2 libxtst6 python3-cairo python3-cairocffi
  python3-cffi python3-graph-tool python3-pycparser python3-xcffib
  session-migration ubuntu-mono
0 upgraded, 71 newly installed, 0 to remove and 33 not upgraded.
Need to get 67.7 MB of archives.
After this operation, 451 MB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu jammy/main amd64 hicolor-icon-theme all 0.17-2 [9976 B]
Get:2 https://downloads.skewed.de/apt jammy/main amd64 python3-graph-tool amd64 2.59 [51.2 MB]
Get:3 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libgdk-pixbuf2.0-common all 2.42.8+dfsg-1ubuntu0.2 [5530 B]
Get:4 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.8+dfsg-1ubuntu0.2 [148 kB]
Get:5 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 gtk-update-icon-cache amd64 3.24.33-1ubuntu2 [31.4 kB]
Get:6 http://archive.ubuntu.com/ubuntu jammy/main amd64 humanity-icon-theme all 0.6.16 [1282 kB]
Get:7 http://archive.ubuntu.com/ubuntu jammy/main amd64 ubuntu-mono all 20.10-0ubuntu2 [153 kB]
Get:8 http://archive.ubuntu.com/ubuntu jammy/main amd64 adwaita-icon-theme all 41.0-1ubuntu1 [3444 kB]
Get:9 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxi6 amd64 2:1.8-1build1 [32.6 kB]
Get:10 http://archive.ubuntu.com/ubuntu jammy/main amd64 libatspi2.0-0 amd64 2.44.0-3 [80.9 kB]
Get:11 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxtst6 amd64 2:1.2.3-1build4 [13.4 kB]
Get:12 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 dbus-user-session amd64 1.12.20-2ubuntu4.1 [9442 B]
Get:13 http://archive.ubuntu.com/ubuntu jammy/main amd64 libdconf1 amd64 0.40.0-3 [40.5 kB]
Get:14 http://archive.ubuntu.com/ubuntu jammy/main amd64 dconf-service amd64 0.40.0-3 [28.5 kB]
Get:15 http://archive.ubuntu.com/ubuntu jammy/main amd64 dconf-gsettings-backend amd64 0.40.0-3 [22.8 kB]
Get:16 http://archive.ubuntu.com/ubuntu jammy/main amd64 session-migration amd64 0.3.6 [9774 B]
Get:17 http://archive.ubuntu.com/ubuntu jammy/main amd64 gsettings-desktop-schemas all 42.0-1ubuntu1 [31.1 kB]
Get:18 http://archive.ubuntu.com/ubuntu jammy/main amd64 at-spi2-core amd64 2.44.0-3 [54.4 kB]
Get:19 http://archive.ubuntu.com/ubuntu jammy/main amd64 libatk1.0-data all 2.36.0-3build1 [2824 B]
Get:20 http://archive.ubuntu.com/ubuntu jammy/main amd64 libatk1.0-0 amd64 2.36.0-3build1 [51.9 kB]
Get:21 http://archive.ubuntu.com/ubuntu jammy/main amd64 gir1.2-atk-1.0 amd64 2.36.0-3build1 [21.0 kB]
Get:22 http://archive.ubuntu.com/ubuntu jammy/main amd64 gir1.2-freedesktop amd64 1.72.0-1 [22.3 kB]
Get:23 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 gir1.2-gdkpixbuf-2.0 amd64 2.42.8+dfsg-1ubuntu0.2 [9482 B]
Get:24 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 gir1.2-harfbuzz-0.0 amd64 2.7.4-1ubuntu3.1 [31.6 kB]
Get:25 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libpangoxft-1.0-0 amd64 1.50.6+ds-2ubuntu1 [31.0 kB]
Get:26 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 gir1.2-pango-1.0 amd64 1.50.6+ds-2ubuntu1 [44.0 kB]
Get:27 http://archive.ubuntu.com/ubuntu jammy/main amd64 libatk-bridge2.0-0 amd64 2.38.0-3 [66.6 kB]
Get:28 http://archive.ubuntu.com/ubuntu jammy/main amd64 libcairo-gobject2 amd64 1.16.0-5ubuntu2 [19.4 kB]
Get:29 http://archive.ubuntu.com/ubuntu jammy/main amd64 libcolord2 amd64 1.4.6-1 [155 kB]
Get:30 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libavahi-common-data amd64 0.8-5ubuntu5.2 [23.8 kB]
Get:31 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libavahi-common3 amd64 0.8-5ubuntu5.2 [23.9 kB]
Get:32 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libavahi-client3 amd64 0.8-5ubuntu5.2 [28.0 kB]
Get:33 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libcups2 amd64 2.4.1op1-1ubuntu4.7 [264 kB]
Get:34 http://archive.ubuntu.com/ubuntu jammy/main amd64 libepoxy0 amd64 1.5.10-1 [237 kB]
Get:35 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libwayland-client0 amd64 1.20.0-1ubuntu0.1 [25.9 kB]
Get:36 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libwayland-cursor0 amd64 1.20.0-1ubuntu0.1 [10.7 kB]
Get:37 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libwayland-egl1 amd64 1.20.0-1ubuntu0.1 [5582 B]
Get:38 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxcomposite1 amd64 1:0.4.5-1build2 [7192 B]
Get:39 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxfixes3 amd64 1:6.0.0-1 [11.7 kB]
Get:40 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxcursor1 amd64 1:1.2.0-2build4 [20.9 kB]
Get:41 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxdamage1 amd64 1:1.1.5-2build2 [7154 B]
Get:42 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxinerama1 amd64 2:1.1.4-3 [7382 B]
Get:43 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxkbcommon0 amd64 1.4.0-1 [125 kB]
Get:44 http://archive.ubuntu.com/ubuntu jammy/main amd64 libxrandr2 amd64 2:1.5.2-1build1 [20.4 kB]
Get:45 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libgtk-3-common all 3.24.33-1ubuntu2 [239 kB]
Get:46 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libgtk-3-0 amd64 3.24.33-1ubuntu2 [3053 kB]
Get:47 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 gir1.2-gtk-3.0 amd64 3.24.33-1ubuntu2 [240 kB]
Get:48 http://archive.ubuntu.com/ubuntu jammy/main amd64 libsuitesparseconfig5 amd64 1:5.10.1+dfsg-4build1 [10.4 kB]
Get:49 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libamd2 amd64 1:5.10.1+dfsg-4build1 [21.6 kB]
Get:50 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libarpack2 amd64 3.8.0-1 [92.4 kB]
Get:51 http://archive.ubuntu.com/ubuntu jammy/main amd64 libboost-context1.74.0 amd64 1.74.0-14ubuntu3 [223 kB]
Get:52 http://archive.ubuntu.com/ubuntu jammy/main amd64 libboost-iostreams1.74.0 amd64 1.74.0-14ubuntu3 [245 kB]
Get:53 http://archive.ubuntu.com/ubuntu jammy/main amd64 libboost-python1.74.0 amd64 1.74.0-14ubuntu3 [299 kB]
Get:54 http://archive.ubuntu.com/ubuntu jammy/main amd64 libboost-regex1.74.0 amd64 1.74.0-14ubuntu3 [511 kB]
Get:55 http://archive.ubuntu.com/ubuntu jammy/main amd64 libsigc++-2.0-0v5 amd64 2.10.4-2ubuntu3 [12.1 kB]
Get:56 http://archive.ubuntu.com/ubuntu jammy/main amd64 libcairomm-1.0-1v5 amd64 1.12.2-4build3 [45.1 kB]
Get:57 http://archive.ubuntu.com/ubuntu jammy/main amd64 libcolamd2 amd64 1:5.10.1+dfsg-4build1 [18.0 kB]
Get:58 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libcxsparse3 amd64 1:5.10.1+dfsg-4build1 [70.8 kB]
Get:59 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libgdk-pixbuf2.0-bin amd64 2.42.8+dfsg-1ubuntu0.2 [14.2 kB]
Get:60 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libglpk40 amd64 5.0-1 [361 kB]
Get:61 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libgtk-3-bin amd64 3.24.33-1ubuntu2 [69.5 kB]
Get:62 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libplfit0 amd64 0.9.3+ds-1ubuntu1 [28.7 kB]
Get:63 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libigraph2 amd64 0.9.6+ds-2ubuntu1 [823 kB]
Get:64 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libigraph-dev amd64 0.9.6+ds-2ubuntu1 [69.4 kB]
Get:65 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 librsvg2-2 amd64 2.52.5+dfsg-3ubuntu0.2 [2974 kB]
Get:66 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 librsvg2-common amd64 2.52.5+dfsg-3ubuntu0.2 [17.7 kB]
Get:67 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-cairo amd64 1.20.1-3build1 [73.7 kB]
Get:68 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-pycparser all 2.21-1 [76.9 kB]
Get:69 http://archive.ubuntu.com/ubuntu jammy/main amd64 python3-cffi all 1.15.0-1build2 [72.6 kB]
Get:70 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-xcffib all 0.11.1-2 [63.3 kB]
Get:71 http://archive.ubuntu.com/ubuntu jammy/universe amd64 python3-cairocffi all 1.2.0-2 [70.3 kB]
debconf: unable to initialize frontend: Dialog
debconf: (Dialog frontend will not work on a dumb terminal, an emacs shell buffer, or without a controlling terminal.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (This frontend requires a controlling tty.)
debconf: falling back to frontend: Teletype
dpkg-preconfigure: unable to re-open stdin: 
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+ pip3 install --upgrade pip setuptools
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  Installing build dependencies: started
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Building wheels for collected packages: mpi4py
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Successfully built mpi4py
Installing collected packages: numpy, mpi4py, cython, scipy
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Successfully installed cython-3.0.8 mpi4py-3.1.5 numpy-1.26.3 scipy-1.12.0
+ pip install --upgrade 'networkx>=2.4' python-igraph
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Successfully installed igraph-0.11.3 networkx-3.2.1 python-igraph-0.11.3 texttable-1.7.0
+ pip install --upgrade 'matplotlib<3.7' seaborn shapely svg.path dxfgrabber cartopy geopandas descartes lxml
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Downloading pyproj-3.6.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.3 MB)
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Downloading click-8.1.7-py3-none-any.whl (97 kB)
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Installing collected packages: dxfgrabber, tzdata, svg.path, shapely, python-dateutil, pyshp, lxml, contourpy, click, certifi, pyproj, pandas, matplotlib, cligj, click-plugins, seaborn, fiona, descartes, cartopy, geopandas
  WARNING: The script pyproj is installed in '/home/build/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script fio is installed in '/home/build/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script feature_download is installed in '/home/build/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Successfully installed cartopy-0.22.0 certifi-2023.11.17 click-8.1.7 click-plugins-1.1.1 cligj-0.7.2 contourpy-1.2.0 descartes-1.1.0 dxfgrabber-1.0.1 fiona-1.9.5 geopandas-0.14.2 lxml-5.1.0 matplotlib-3.6.3 pandas-2.2.0 pyproj-3.6.1 pyshp-2.3.1 python-dateutil-2.8.2 seaborn-0.13.2 shapely-2.0.2 svg.path-6.3 tzdata-2023.4
+ pip install --upgrade pytest pytest-mpi cov-core coverage 'coveralls[yaml]'
Defaulting to user installation because normal site-packages is not writeable
Requirement already satisfied: pytest in /usr/lib/python3/dist-packages (6.2.5)
Collecting pytest
  Downloading pytest-7.4.4-py3-none-any.whl.metadata (7.9 kB)
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Collecting cov-core
  Downloading cov-core-1.15.0.tar.gz (5.9 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting coverage
  Downloading coverage-7.4.1-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.2 kB)
Collecting coveralls[yaml]
  Downloading coveralls-3.3.1-py2.py3-none-any.whl (14 kB)
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Collecting exceptiongroup>=1.0.0rc8 (from pytest)
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Collecting coverage
  Downloading coverage-6.5.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (213 kB)
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Collecting docopt>=0.6.1 (from coveralls[yaml])
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Requirement already satisfied: certifi>=2017.4.17 in ./.local/lib/python3.10/site-packages (from requests>=1.0.0->coveralls[yaml]) (2023.11.17)
Downloading pytest-7.4.4-py3-none-any.whl (325 kB)
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Building wheels for collected packages: cov-core, docopt
  Building wheel for cov-core (setup.py): started
  Building wheel for cov-core (setup.py): finished with status 'done'
  Created wheel for cov-core: filename=cov_core-1.15.0-py3-none-any.whl size=6011 sha256=781378e3eb01ec05fa551f63858725a695feae89ef5e051a274a4fbd29e1d1e3
  Stored in directory: /home/build/.cache/pip/wheels/80/73/f2/6e7f18d4d52855e20db9463f7a23679627c90d9e0c46fb9046
  Building wheel for docopt (setup.py): started
  Building wheel for docopt (setup.py): finished with status 'done'
  Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13706 sha256=6960c9f237bc600f00f5e1a9ec57388ae1cc92a4acc2496ada34f68f625c8e9f
  Stored in directory: /home/build/.cache/pip/wheels/fc/ab/d4/5da2067ac95b36618c629a5f93f809425700506f72c9732fac
Successfully built cov-core docopt
Installing collected packages: docopt, urllib3, tomli, idna, exceptiongroup, coverage, charset-normalizer, requests, pytest, cov-core, pytest-mpi, coveralls
  WARNING: The scripts coverage, coverage-3.10 and coverage3 are installed in '/home/build/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script normalizer is installed in '/home/build/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts py.test and pytest are installed in '/home/build/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script coveralls is installed in '/home/build/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Successfully installed charset-normalizer-3.3.2 cov-core-1.15.0 coverage-6.5.0 coveralls-3.3.1 docopt-0.6.2 exceptiongroup-1.2.0 idna-3.6 pytest-7.4.4 pytest-mpi-0.6 requests-2.31.0 tomli-2.0.1 urllib3-2.1.0
+ mv .coveralls.yml NNGT/.coveralls.yml
+ cd NNGT
+ pip install .
Defaulting to user installation because normal site-packages is not writeable
Processing /home/build/NNGT
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: cython in /home/build/.local/lib/python3.10/site-packages (from NNGT==2.7.1.dev0) (3.0.8)
Collecting platformdirs (from NNGT==2.7.1.dev0)
  Downloading platformdirs-4.1.0-py3-none-any.whl.metadata (11 kB)
Requirement already satisfied: numpy>=1.17 in /home/build/.local/lib/python3.10/site-packages (from NNGT==2.7.1.dev0) (1.26.3)
Requirement already satisfied: scipy>=0.11 in /home/build/.local/lib/python3.10/site-packages (from NNGT==2.7.1.dev0) (1.12.0)
Downloading platformdirs-4.1.0-py3-none-any.whl (17 kB)
Building wheels for collected packages: NNGT
  Building wheel for NNGT (pyproject.toml): started
  Building wheel for NNGT (pyproject.toml): finished with status 'done'
  Created wheel for NNGT: filename=NNGT-2.7.1.dev0-cp310-cp310-linux_x86_64.whl size=1625972 sha256=6113c121e79efd8fa72effa1f3e6e81ffe799ae51b42f2aff351e3afa2be1890
  Stored in directory: /tmp/pip-ephem-wheel-cache-b7wvnrt9/wheels/92/fa/40/bf3cd25b985bea2c1c5a04b1b799a3c432eded83a10407205a
Successfully built NNGT
Installing collected packages: platformdirs, NNGT
Successfully installed NNGT-2.7.1.dev0 platformdirs-4.1.0
+ echo 'export PATH=/home/build/.local/bin:$PATH'
test
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+ cd NNGT
+ GL=all
+ coverage run -p -m pytest testing/library_compatibility.py
============================= test session starts ==============================
platform linux -- Python 3.10.12, pytest-7.4.4, pluggy-0.13.0
rootdir: /home/build/NNGT
plugins: mpi-0.6
collected 11 items

testing/library_compatibility.py ...........                             [100%]

=============================== warnings summary ===============================
nngt/geometry/shape.py:66
  /home/build/NNGT/nngt/geometry/shape.py:66: DeprecationWarning: invalid escape sequence '\m'
    """

nngt/geometry/shape.py:91
  /home/build/NNGT/nngt/geometry/shape.py:91: DeprecationWarning: invalid escape sequence '\m'
    '''

nngt/geometry/shape.py:134
  /home/build/NNGT/nngt/geometry/shape.py:134: DeprecationWarning: invalid escape sequence '\m'
    '''

nngt/geometry/shape.py:182
  /home/build/NNGT/nngt/geometry/shape.py:182: DeprecationWarning: invalid escape sequence '\m'
    '''

nngt/geometry/shape.py:225
  /home/build/NNGT/nngt/geometry/shape.py:225: DeprecationWarning: invalid escape sequence '\m'
    '''

nngt/geometry/shape.py:282
  /home/build/NNGT/nngt/geometry/shape.py:282: DeprecationWarning: invalid escape sequence '\m'
    '''

nngt/geometry/shape.py:333
  /home/build/NNGT/nngt/geometry/shape.py:333: DeprecationWarning: invalid escape sequence '\m'
    '''

nngt/geometry/shape.py:389
  /home/build/NNGT/nngt/geometry/shape.py:389: DeprecationWarning: invalid escape sequence '\m'
    '''

nngt/geometry/shape.py:1119
  /home/build/NNGT/nngt/geometry/shape.py:1119: DeprecationWarning: invalid escape sequence '\m'
    '''

../../../usr/lib/python3/dist-packages/pythran/config.py:8
  /usr/lib/python3/dist-packages/pythran/config.py:8: DeprecationWarning: 
  
    `numpy.distutils` is deprecated since NumPy 1.23.0, as a result
    of the deprecation of `distutils` itself. It will be removed for
    Python >= 3.12. For older Python versions it will remain present.
    It is recommended to use `setuptools < 60.0` for those Python versions.
    For more details, see:
      https://numpy.org/devdocs/reference/distutils_status_migration.html 
  
  
    import numpy.distutils.system_info as numpy_sys

../.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:66
  /home/build/.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:66: DeprecationWarning: msvccompiler is deprecated and slated to be removed in the future. Please discontinue use or file an issue with pypa/distutils describing your use case.
    warnings.warn(

../../../usr/lib/python3/dist-packages/pythran/tables.py:4520
  /usr/lib/python3/dist-packages/pythran/tables.py:4520: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.
    if not hasattr(numpy, method):

../../../usr/lib/python3/dist-packages/pythran/tables.py:4553
  /usr/lib/python3/dist-packages/pythran/tables.py:4553: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar.
    obj = getattr(themodule, elem)

../.local/lib/python3.10/site-packages/setuptools/sandbox.py:13
  /home/build/.local/lib/python3.10/site-packages/setuptools/sandbox.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
    import pkg_resources

../.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2868
  /home/build/.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2868: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`.
  Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
    declare_namespace(pkg)

../.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8
  /home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
    from distutils.dep_util import newer_group

../.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11
  /home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
    from distutils.dep_util import newer_group

../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
  /home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
    from distutils.dep_util import newer_group, newer

testing/library_compatibility.py::test_weighted_undirected_clustering
testing/library_compatibility.py::test_weighted_undirected_clustering
testing/library_compatibility.py::test_weighted_undirected_clustering
testing/library_compatibility.py::test_weighted_undirected_clustering
  /home/build/.local/lib/python3.10/site-packages/scipy/sparse/_index.py:145: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
    self._set_arrayXarray(i, j, x)

testing/library_compatibility.py::test_binary_shortest_paths
  /home/build/NNGT/nngt/analysis/ig_functions.py:351: RuntimeWarning: Couldn't reach some vertices at src/paths/unweighted.c:440
    path = graph.get_shortest_paths(source, target, mode="out", weights=w)[0]

testing/library_compatibility.py::test_weighted_shortest_paths
  /home/build/NNGT/nngt/analysis/ig_functions.py:351: RuntimeWarning: Couldn't reach some vertices. at src/paths/dijkstra.c:528
    path = graph.get_shortest_paths(source, target, mode="out", weights=w)[0]

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================= 11 passed, 25 warnings in 14.86s =======================
+ GL=gt
+ coverage run -p -m pytest testing
============================= test session starts ==============================
platform linux -- Python 3.10.12, pytest-7.4.4, pluggy-0.13.0
rootdir: /home/build/NNGT
plugins: mpi-0.6
collected 91 items

testing/test_analysis.py ..........                                      [ 10%]
testing/test_attributes.py ...........                                   [ 23%]
testing/test_basics.py F............                                     [ 37%]
testing/test_connect_group_type.py ...                                   [ 40%]
testing/test_examples.py sss                                             [ 43%]
testing/test_gallery.py ..                                               [ 46%]
testing/test_generation.py .                                             [ 47%]
testing/test_generation2.py ...s.......                                  [ 59%]
testing/test_graphclasses.py ....                                        [ 63%]
testing/test_group_pop.py .....                                          [ 69%]
testing/test_io.py ........                                              [ 78%]
testing/test_mpi.py s                                                    [ 79%]
testing/test_nest.py ss                                                  [ 81%]
testing/test_plots.py ....s...                                           [ 90%]
testing/test_random.py ..                                                [ 92%]
testing/test_rewire.py .....                                             [ 97%]
testing/test_weights.py ..                                               [100%]

=================================== FAILURES ===================================
_________________________________ test_config __________________________________

    def test_config():
        '''
        Check get/set_config functions.
        '''
        old_cfg = nngt.get_config(detailed=True)
    
        # get config
        cfg = nngt.get_config()
    
        for k, v in cfg.items():
            assert v == nngt.get_config(k)
    
        cfg_detailed = nngt.get_config(detailed=True)
    
        for k, v in cfg_detailed.items():
            assert v == nngt.get_config(k)
    
        # set config (omp)
        num_omp = 2
        nngt.set_config("omp", num_omp)
    
        assert nngt.get_config("multithreading")
        assert nngt.get_config("omp") == num_omp
    
        # set config (mpi)
        has_mpi = False
    
        try:
            import mpi4py
            has_mpi = True
        except ImportError:
            pass
    
        if has_mpi:
            nngt.set_config("mpi", True)
    
            assert nngt.get_config("mpi")
            assert not nngt.get_config("multithreading")
            assert nngt.get_config("omp") == 1
    
        nngt.set_config("mpi", False)
    
        # key error
        key_error = False
    
        try:
            nngt.set_config("random_entry", "plop")
        except KeyError:
            key_error = True
    
        assert key_error
    
        # except for palettes
        nngt.set_config("palette_continuous", "viridis")
        nngt.set_config("palette_discrete", "Set2")
    
        # save and reset config
        nngt.save_config()
    
        savedfile = join(
            user_config_dir("nngt", appauthor=False), "nngt.conf.saved")
    
        print("here", nngt.get_config("mpi_comm").Get_rank())
        assert isfile(savedfile)
    
        mpi_barrier()
        print("here", nngt.get_config("mpi_comm").Get_rank())
        with open(savedfile, "r") as f:
            saved_conf = json.load(f)
    
            current_conf = nngt.get_config()
    
>           assert saved_conf == current_conf
E           AssertionError: assert {'backend': '...: 'main', ...} == {'backend': '...': False, ...}
E             Omitting 9 identical items, use -vv to show
E             Left contains 14 more items:
E             {'color_lib': 'matplotlib',
E              'db_folder': '/home/build/NNGT',
E              'db_name': 'main',
E              'db_to_file': False,
E              'db_url': None,...
E             
E             ...Full output truncated (10 lines hidden), use '-vv' to show

testing/test_basics.py:101: AssertionError
----------------------------- Captured stdout call -----------------------------
here 0
here 0
------------------------------ Captured log call -------------------------------
INFO     nngt.lib.nngt_config:logger.py:96 from coverage (L8) - "mpi" set to True but previous configuration was using OpenMP; setting "multithreading" to False to switch to mpi algorithms.
INFO     nngt.lib.nngt_config:nngt_config.py:387 
# ----------- #
# NNGT config #
# ----------- #
Graph library:  graph-tool 2.59 
Multithreading: False (1 thread)
MPI:            True (1 process)
Plotting:       True
NEST support:   False
Shapely:        2.0.2
SVG support:    True
DXF support:    True
Database:       False
Geo support:    True

INFO     nngt.lib.nngt_config:nngt_config.py:387 
# ----------- #
# NNGT config #
# ----------- #
Graph library:  graph-tool 2.59 
Multithreading: False (1 thread)
MPI:            False
Plotting:       True
NEST support:   False
Shapely:        2.0.2
SVG support:    True
DXF support:    True
Database:       False
Geo support:    True

INFO     nngt.lib.nngt_config:nngt_config.py:387 
# ----------- #
# NNGT config #
# ----------- #
Graph library:  graph-tool 2.59 
Multithreading: False (1 thread)
MPI:            False
Plotting:       True
NEST support:   False
Shapely:        2.0.2
SVG support:    True
DXF support:    True
Database:       False
Geo support:    True

INFO     nngt.lib.nngt_config:nngt_config.py:387 
# ----------- #
# NNGT config #
# ----------- #
Graph library:  graph-tool 2.59 
Multithreading: False (1 thread)
MPI:            False
Plotting:       True
NEST support:   False
Shapely:        2.0.2
SVG support:    True
DXF support:    True
Database:       False
Geo support:    True
=============================== warnings summary ===============================
../../../usr/lib/python3/dist-packages/pythran/config.py:8
  /usr/lib/python3/dist-packages/pythran/config.py:8: DeprecationWarning: 
  
    `numpy.distutils` is deprecated since NumPy 1.23.0, as a result
    of the deprecation of `distutils` itself. It will be removed for
    Python >= 3.12. For older Python versions it will remain present.
    It is recommended to use `setuptools < 60.0` for those Python versions.
    For more details, see:
      https://numpy.org/devdocs/reference/distutils_status_migration.html 
  
  
    import numpy.distutils.system_info as numpy_sys

../.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:66
  /home/build/.local/lib/python3.10/site-packages/setuptools/_distutils/msvccompiler.py:66: DeprecationWarning: msvccompiler is deprecated and slated to be removed in the future. Please discontinue use or file an issue with pypa/distutils describing your use case.
    warnings.warn(

../../../usr/lib/python3/dist-packages/pythran/tables.py:4520
  /usr/lib/python3/dist-packages/pythran/tables.py:4520: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.
    if not hasattr(numpy, method):

../../../usr/lib/python3/dist-packages/pythran/tables.py:4553
  /usr/lib/python3/dist-packages/pythran/tables.py:4553: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar.
    obj = getattr(themodule, elem)

../.local/lib/python3.10/site-packages/setuptools/sandbox.py:13
  /home/build/.local/lib/python3.10/site-packages/setuptools/sandbox.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
    import pkg_resources

../.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2868
  /home/build/.local/lib/python3.10/site-packages/pkg_resources/__init__.py:2868: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`.
  Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
    declare_namespace(pkg)

../.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8
  /home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_ext.py:8: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
    from distutils.dep_util import newer_group

../.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11
  /home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_clib.py:11: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
    from distutils.dep_util import newer_group

../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
../.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10
  /home/build/.local/lib/python3.10/site-packages/numpy/distutils/command/build_src.py:10: DeprecationWarning: dep_util is Deprecated. Use functions from setuptools instead.
    from distutils.dep_util import newer_group, newer

testing/test_analysis.py: 7 warnings
testing/test_generation2.py: 1 warning
testing/test_plots.py: 2 warnings
testing/test_rewire.py: 1 warning
  /home/build/.local/lib/python3.10/site-packages/scipy/sparse/_index.py:145: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
    self._set_arrayXarray(i, j, x)

testing/test_plots.py::test_hive_plot
  /home/build/NNGT/nngt/plot/plt_networks.py:975: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`.
    _, axis = plt.subplots()

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED testing/test_basics.py::test_config - AssertionError: assert {'backend...
======= 1 failed, 82 passed, 8 skipped, 22 warnings in 60.70s (0:01:00) ========
Build complete: failed 9 months ago (took 3 minutes)