Improved unit doc and context conversion
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[#1131978] 2024/01/17 17:02:30 Booting image ubuntu/lts (default) on port 22631 [#1131978] 2024/01/17 17:02:30 Waiting for guest to settle [#1131978] 2024/01/17 17:02:37 Sending tasks [#1131978] 2024/01/17 17:02:40 Sending build environment [#1131978] 2024/01/17 17:02:40 Sending secrets [#1131978] 2024/01/17 17:02:40 Resolving secret 69332acb-b779-4bb2-ae8a-719f8e150ace [#1131978] 2024/01/17 17:02:41 Installing packages Warning: Permanently added '[localhost]:22631' (ED25519) to the list of known hosts. Hit:1 http://archive.ubuntu.com/ubuntu jammy InRelease Get:2 http://archive.ubuntu.com/ubuntu jammy-security InRelease [110 kB] Get:3 http://archive.ubuntu.com/ubuntu jammy-updates InRelease [119 kB] Hit:4 http://archive.ubuntu.com/ubuntu jammy-backports InRelease Get:5 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 Packages [1065 kB] Get:6 http://archive.ubuntu.com/ubuntu jammy-security/main Translation-en [201 kB] Get:7 http://archive.ubuntu.com/ubuntu jammy-security/restricted amd64 Packages [1248 kB] Get:8 http://archive.ubuntu.com/ubuntu jammy-security/restricted Translation-en [204 kB] Get:9 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 Packages [829 kB] Get:10 http://archive.ubuntu.com/ubuntu jammy-security/universe Translation-en [158 kB] Get:11 http://archive.ubuntu.com/ubuntu jammy-security/multiverse amd64 Packages [37.1 kB] Get:12 http://archive.ubuntu.com/ubuntu jammy-security/multiverse Translation-en [7476 B] Get:13 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 Packages [1280 kB] Get:14 http://archive.ubuntu.com/ubuntu jammy-updates/main Translation-en [262 kB] Get:15 http://archive.ubuntu.com/ubuntu jammy-updates/restricted amd64 Packages [1276 kB] Get:16 http://archive.ubuntu.com/ubuntu jammy-updates/restricted Translation-en [208 kB] Get:17 http://archive.ubuntu.com/ubuntu jammy-updates/universe amd64 Packages [1028 kB] Get:18 http://archive.ubuntu.com/ubuntu jammy-updates/universe Translation-en [229 kB] Get:19 http://archive.ubuntu.com/ubuntu jammy-updates/multiverse amd64 Packages [42.1 kB] Get:20 http://archive.ubuntu.com/ubuntu jammy-updates/multiverse Translation-en [10.1 kB] Fetched 8315 kB in 1s (8087 kB/s) Reading package lists... Warning: Permanently added '[localhost]:22631' (ED25519) to the list of known hosts. Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: javascript-common libexpat1-dev libjs-jquery libjs-sphinxdoc libjs-underscore libpython3-dev libpython3.10 libpython3.10-dev python3-dev python3-distutils python3-lib2to3 python3-setuptools python3-wheel python3.10-dev zlib1g-dev Suggested packages: apache2 | lighttpd | httpd python-setuptools-doc The following NEW packages will be installed: javascript-common libexpat1-dev libjs-jquery libjs-sphinxdoc libjs-underscore libpython3-dev libpython3.10 libpython3.10-dev python3-dev python3-distutils python3-lib2to3 python3-pip python3-setuptools python3-wheel python3.10-dev zlib1g-dev 0 upgraded, 16 newly installed, 0 to remove and 17 not upgraded. Need to get 10.0 MB of archives. After this operation, 40.5 MB of additional disk space will be used. Get:1 http://archive.ubuntu.com/ubuntu jammy/main amd64 javascript-common all 11+nmu1 [5936 B] Get:2 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libexpat1-dev amd64 2.4.7-1ubuntu0.2 [147 kB] Get:3 http://archive.ubuntu.com/ubuntu jammy/main amd64 libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [321 kB] Get:4 http://archive.ubuntu.com/ubuntu jammy/main amd64 libjs-underscore all 1.13.2~dfsg-2 [118 kB] Get:5 http://archive.ubuntu.com/ubuntu jammy/main amd64 libjs-sphinxdoc all 4.3.2-1 [139 kB] Get:6 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libpython3.10 amd64 3.10.12-1~22.04.3 [1948 kB] Get:7 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu9.2 [164 kB] Get:8 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libpython3.10-dev amd64 3.10.12-1~22.04.3 [4762 kB] Get:9 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 libpython3-dev amd64 3.10.6-1~22.04 [7166 B] Get:10 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3.10-dev amd64 3.10.12-1~22.04.3 [507 kB] Get:11 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-lib2to3 all 3.10.8-1~22.04 [77.6 kB] Get:12 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-distutils all 3.10.8-1~22.04 [139 kB] Get:13 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-dev amd64 3.10.6-1~22.04 [26.0 kB] Get:14 http://archive.ubuntu.com/ubuntu jammy-security/main amd64 python3-setuptools all 59.6.0-1.2ubuntu0.22.04.1 [339 kB] Get:15 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 python3-wheel all 0.37.1-2ubuntu0.22.04.1 [32.0 kB] Get:16 http://archive.ubuntu.com/ubuntu jammy-security/universe amd64 python3-pip all 22.0.2+dfsg-1ubuntu0.4 [1305 kB] Fetched 10.0 MB in 0s (26.5 MB/s) Selecting previously unselected package javascript-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 38978 files and directories currently installed.) Preparing to unpack .../00-javascript-common_11+nmu1_all.deb ... Unpacking javascript-common (11+nmu1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../01-libexpat1-dev_2.4.7-1ubuntu0.2_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.4.7-1ubuntu0.2) ... Selecting previously unselected package libjs-jquery. 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Setting up python3-wheel (0.37.1-2ubuntu0.22.04.1) ... Setting up libpython3.10-dev:amd64 (3.10.12-1~22.04.3) ... Setting up python3-pip (22.0.2+dfsg-1ubuntu0.4) ... Setting up libjs-sphinxdoc (4.3.2-1) ... Setting up python3.10-dev (3.10.12-1~22.04.3) ... Setting up libpython3-dev:amd64 (3.10.6-1~22.04) ... Setting up python3-dev (3.10.6-1~22.04) ... Processing triggers for libc-bin (2.35-0ubuntu3.5) ... [#1131978] 2024/01/17 17:02:45 Cloning repositories Cloning into 'OrgMatt'... + cd OrgMatt + git checkout -q afeda4b16486bc68fff4a59de496d1cb0c3a97df + cd OrgMatt + git submodule update --init --recursive [#1131978] 2024/01/17 17:02:47 Running task path [#1131978] 2024/01/17 17:02:47 Running task check [#1131978] 2024/01/17 17:02:49 Running task setup [#1131978] 2024/01/17 17:03:08 Running task test [#1131978] 2024/01/17 17:03:15 Running task doc |
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+ echo 'export PATH=$PATH:/home/build/.local/bin' |
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+ pip3 install reuse
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Collecting reuse
Downloading reuse-2.1.0-cp310-cp310-manylinux_2_35_x86_64.whl (187 kB)
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Installing collected packages: boolean.py, MarkupSafe, license-expression, chardet, python-debian, Jinja2, binaryornot, reuse
Successfully installed Jinja2-3.1.3 MarkupSafe-2.1.3 binaryornot-0.4.4 boolean.py-4.0 chardet-5.2.0 license-expression-30.2.0 python-debian-0.1.49 reuse-2.1.0
+ cd OrgMatt
+ reuse lint
# SUMMARY
* Bad licenses: 0
* Deprecated licenses: 0
* Licenses without file extension: 0
* Missing licenses: 0
* Unused licenses: 0
* Used licenses: Python-2.0, CC-BY-4.0, GPL-3.0-or-later, BSD-2-Clause, CC0-1.0, CC-BY-SA-4.0
* Read errors: 0
* files with copyright information: 75 / 75
* files with license information: 75 / 75
Congratulations! Your project is compliant with version 3.0 of the REUSE Specification :-)
|
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+ cd OrgMatt
+ pip3 install --upgrade pip pytest setuptools
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Installing collected packages: tomli, setuptools, pluggy, pip, packaging, iniconfig, exceptiongroup, pytest
Successfully installed exceptiongroup-1.2.0 iniconfig-2.0.0 packaging-23.2 pip-23.3.2 pluggy-1.3.0 pytest-7.4.4 setuptools-69.0.3 tomli-2.0.1
+ pip install -r requirements.txt
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Installing collected packages: pytz, globalwarmingpotentials, tzdata, typing-extensions, six, pyparsing, pillow, numpy, kiwisolver, fonttools, cycler, scipy, python-dateutil, pint, contourpy, pandas, matplotlib, seaborn, openscm-units
Successfully installed contourpy-1.2.0 cycler-0.12.1 fonttools-4.47.2 globalwarmingpotentials-0.9.4 kiwisolver-1.4.5 matplotlib-3.8.2 numpy-1.26.3 openscm-units-0.5.4 pandas-2.1.4 pillow-10.2.0 pint-0.23 pyparsing-3.1.1 python-dateutil-2.8.2 pytz-2023.3.post1 scipy-1.11.4 seaborn-0.13.1 six-1.16.0 typing-extensions-4.9.0 tzdata-2023.4
+ pip install coverage
Defaulting to user installation because normal site-packages is not writeable
Collecting coverage
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Downloading coverage-7.4.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (233 kB)
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Installing collected packages: coverage
Successfully installed coverage-7.4.0
+ pip install .
Defaulting to user installation because normal site-packages is not writeable
Processing /home/build/OrgMatt
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Installing backend dependencies: started
Installing backend dependencies: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: numpy in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.3.0) (1.26.3)
Requirement already satisfied: scipy in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.3.0) (1.11.4)
Requirement already satisfied: pandas in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.3.0) (2.1.4)
Requirement already satisfied: pint>=0.19 in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.3.0) (0.23)
Requirement already satisfied: openscm-units in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.3.0) (0.5.4)
Requirement already satisfied: seaborn in /home/build/.local/lib/python3.10/site-packages (from OrgMatt==0.3.0) (0.13.1)
Requirement already satisfied: typing-extensions in /home/build/.local/lib/python3.10/site-packages (from pint>=0.19->OrgMatt==0.3.0) (4.9.0)
Requirement already satisfied: globalwarmingpotentials in /home/build/.local/lib/python3.10/site-packages (from openscm-units->OrgMatt==0.3.0) (0.9.4)
Requirement already satisfied: python-dateutil>=2.8.2 in /home/build/.local/lib/python3.10/site-packages (from pandas->OrgMatt==0.3.0) (2.8.2)
Requirement already satisfied: pytz>=2020.1 in /home/build/.local/lib/python3.10/site-packages (from pandas->OrgMatt==0.3.0) (2023.3.post1)
Requirement already satisfied: tzdata>=2022.1 in /home/build/.local/lib/python3.10/site-packages (from pandas->OrgMatt==0.3.0) (2023.4)
Requirement already satisfied: matplotlib!=3.6.1,>=3.4 in /home/build/.local/lib/python3.10/site-packages (from seaborn->OrgMatt==0.3.0) (3.8.2)
Requirement already satisfied: contourpy>=1.0.1 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.3.0) (1.2.0)
Requirement already satisfied: cycler>=0.10 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.3.0) (0.12.1)
Requirement already satisfied: fonttools>=4.22.0 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.3.0) (4.47.2)
Requirement already satisfied: kiwisolver>=1.3.1 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.3.0) (1.4.5)
Requirement already satisfied: packaging>=20.0 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.3.0) (23.2)
Requirement already satisfied: pillow>=8 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.3.0) (10.2.0)
Requirement already satisfied: pyparsing>=2.3.1 in /home/build/.local/lib/python3.10/site-packages (from matplotlib!=3.6.1,>=3.4->seaborn->OrgMatt==0.3.0) (3.1.1)
Requirement already satisfied: six>=1.5 in /home/build/.local/lib/python3.10/site-packages (from python-dateutil>=2.8.2->pandas->OrgMatt==0.3.0) (1.16.0)
Building wheels for collected packages: OrgMatt
Building wheel for OrgMatt (pyproject.toml): started
Building wheel for OrgMatt (pyproject.toml): finished with status 'done'
Created wheel for OrgMatt: filename=OrgMatt-0.3.0-py3-none-any.whl size=90929 sha256=4f8608871a35ba67f05ae09d4fa026c03e60c374c235d3de91b71f7b3924ab2b
Stored in directory: /tmp/pip-ephem-wheel-cache-5xg3eanq/wheels/fa/c8/54/6668a436f152ec271fbc43c4d4817e40063b0c2195101cffa1
Successfully built OrgMatt
Installing collected packages: OrgMatt
Successfully installed OrgMatt-0.3.0
|
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+ cd OrgMatt + coverage run -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.10.12, pytest-7.4.4, pluggy-1.3.0 rootdir: /home/build/OrgMatt collected 25 items tests/test_data.py ......... [ 36%] tests/test_excreta.py .. [ 44%] tests/test_food.py .. [ 52%] tests/test_impacts.py .. [ 60%] tests/test_nutrients.py ... [ 72%] tests/test_plots.py . [ 76%] tests/test_units.py .... [ 92%] tests/test_utils.py .. [100%] ============================== 25 passed in 5.78s ============================== + coverage report -m Name Stmts Miss Cover Missing --------------------------------------------------------------------- orgmatt/__init__.py 25 0 100% orgmatt/_utils/__init__.py 4 0 100% orgmatt/_utils/logger.py 24 3 88% 37, 39, 43 orgmatt/_utils/tools.py 142 2 99% 83, 183 orgmatt/agrifood/__init__.py 3 0 100% orgmatt/agrifood/biowaste.py 21 2 90% 71, 74 orgmatt/agrifood/human_consumption.py 25 4 84% 42-55 orgmatt/data/__init__.py 42 0 100% orgmatt/excreta.py 21 0 100% orgmatt/impacts/__init__.py 2 0 100% orgmatt/impacts/fertilizers.py 14 0 100% orgmatt/impacts/water.py 20 1 95% 65 orgmatt/nutrients/__init__.py 3 0 100% orgmatt/nutrients/all_nutrients.py 54 2 96% 142, 196 orgmatt/nutrients/nitrogen.py 42 1 98% 169 orgmatt/nutrients/phosphorus.py 42 2 95% 165, 171 orgmatt/plot/__init__.py 3 0 100% orgmatt/plot/distributions.py 66 8 88% 72, 81-82, 89, 127, 180, 195, 198 orgmatt/units.py 116 8 93% 107-111, 114, 117, 120, 195, 203 --------------------------------------------------------------------- TOTAL 669 33 95% |
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+ cd OrgMatt
++ git show -s --pretty=%D HEAD
++ grep -v HEAD
++ tr -s ', /' '\n'
++ sed -n 2p
+ GIT_BRANCH=main
+ set +x
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 126 100 66 100 60 80 73 --:--:-- --:--:-- --:--:-- 153
100 126 100 66 100 60 80 73 --:--:-- --:--:-- --:--:-- 153
{"build_triggered":true,"project":"orgmatt","versions":["latest"]} |